Metatranscriptome assembly - rnaSPAdes or metaSPAdes?

[sjaenick]

Hi there,

to assemble a metatranscriptome dataset (Illumina PE), would you recommend
either rnaSPAdes or metaSPAdes?

Thanks in advance.

[asl]

Hello

It depends... What you aiming to assemble there? Transcripts? Viruses?

[sjaenick]

(Prokaryotic) transcripts, mainly.