Error correction and assembling warnings

[liuyca1]

Description of bug

hello, I get some errors while running spades v3.13.1, I want to assemble a 50M fungi genome by Illumina and Pacbio sequence.
spades.log

error:
=== Error correction and assembling warnings:

• 0:53:34.294 9G / 208G WARN ScaffoldingUniqueEdgeAna (scaff_supplementary.cpp : 59) Less than half of genome in unique edges!
  ======= Warnings saved to /public/home/liuyuanchao/Russula_genome/asembly20240205/warnings.log

warnings.log

spades.log

spades.log

params.txt

params.txt

SPAdes version

SPAdes version: 3.13.1

Operating System

Linux-3.10.0-957.el7.x86_64-x86_64-with-glibc2.17

Python Version

Python version: 3.9.7

Method of SPAdes installation

manual

No errors reported in spades.log

• Yes

[asl]

Given the genome in question it's ok

[liuyca1]

Confused, something wrong with the genome?

[asl]

It's fungal diploid genome with lots of repeats. So it's ok to have more than half of genomes in repeats.