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What's the preferred method to subset a compareClusterResult object prior to plotting ?
I can subset the dataframe, e.g.go_result@compareClusterResult <- subset(go_result@compareClusterResult, Cluster == "desired_cluster"), but plotting still includes all the Clusters (since all the Clusters persist in the object metadata), and I can't use the built-in plotting functions on the dataframe directly because it is not recognized as a compareCluster result.
My use case is a compareClusterResult with many Clusters and GO categories therein; I'd like to compare thinned-down dotplots and cnetplots using only a subset of Clusters.
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Hi -
What's the preferred method to subset a compareClusterResult object prior to plotting ?
I can subset the dataframe, e.g.
go_result@compareClusterResult <- subset(go_result@compareClusterResult, Cluster == "desired_cluster")
, but plotting still includes all the Clusters (since all the Clusters persist in the object metadata), and I can't use the built-in plotting functions on the dataframe directly because it is not recognized as a compareCluster result.My use case is a compareClusterResult with many Clusters and GO categories therein; I'd like to compare thinned-down dotplots and cnetplots using only a subset of Clusters.
Thanks for the handy software and your input!
JT
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