fix skipChecks overriding config file

Author: Japillow

src/checkov/checkovRunner.ts

@@ -85,7 +85,7 @@ export const runCheckovScan = (logger: Logger, checkovInstallation: CheckovInsta
         getGitRepoName(logger, vscode.window.activeTextEditor?.document.fileName).then((repoName) => {
             const repoIdParams = repoName ? ['--repo-id', repoName] : ['--repo-id', 'vscode/default'];
             const checkovArguments: string[] = [...dockerRunParams, ...certificateParams, ...bcIdParam, ...noCertVerifyParam, '-s',
-                ...repoIdParams, ...filePathParams, ...skipCheckParam, '-o', 'json', ...pipRunParams, ...externalChecksParams, ...frameworkParams, ...skipFrameworkParams];
+                ...repoIdParams, ...filePathParams, '-o', 'json', ...pipRunParams, ...externalChecksParams, ...frameworkParams, ...skipFrameworkParams, ...skipCheckParam];
             logger.info('Running checkov:');
             logger.info(`${checkovPath} ${checkovArguments.join(' ')}`);