run without copy

Author: omursahin

dockerfiles/swagger-petstore.dockerfile

@@ -5,6 +5,11 @@ COPY ./dist/jacocoagent.jar .
 
 
 
+
+COPY ./scripts/dockerize/data/additional_files/swagger-petstore/inflector.yaml .
+
+
+
 #ENV TOOL="undefined"
 #ENV RUN="0"
 

jdk_8_maven/cs/rest/original/swagger-petstore/pom.xml

@@ -227,6 +227,11 @@
     </build>
     <dependencies>
 <!--MODIFIED-->
+        <dependency>
+            <groupId>org.glassfish.jersey.containers</groupId>
+            <artifactId>jersey-container-servlet</artifactId>
+            <version>2.41</version>
+        </dependency>
         <dependency>
             <groupId>org.apache.tomcat.embed</groupId>
             <artifactId>tomcat-embed-core</artifactId>

jdk_8_maven/cs/rest/original/swagger-petstore/src/main/java/io/swagger/petstore/Main.java

@@ -2,11 +2,24 @@
 
 package io.swagger.petstore;
 
+import org.apache.catalina.Context;
+import org.apache.catalina.Wrapper;
 import org.apache.catalina.startup.Tomcat;
-
+import org.apache.catalina.webresources.DirResourceSet;
+import org.apache.catalina.webresources.JarResourceSet;
+import org.apache.catalina.webresources.StandardRoot;
+
+import javax.servlet.Servlet;
+import javax.servlet.http.HttpServlet;
+import javax.servlet.http.HttpServletRequest;
+import javax.servlet.http.HttpServletResponse;
 import java.io.File;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.OutputStream;
 import java.net.URL;
 import java.nio.file.Files;
+import java.security.CodeSource;
 
 public class Main {
     Tomcat tomcat;
@@ -19,59 +32,37 @@ public void startServer(int port) throws Exception {
 
         tomcat.setPort(port);
         tomcat.getConnector();
-        URL webappUrl = Main.class.getClassLoader().getResource("webapp");
-
-        String webappDirLocation;
-
-        // Handle the case where the webapp is inside a JAR
-        if (webappUrl.getProtocol().equals("jar")) {
-            // Extract the JAR file path and the entry path
-            String jarPath = webappUrl.getPath().substring(5, webappUrl.getPath().indexOf("!"));
-            String entryPath = webappUrl.getPath().substring(webappUrl.getPath().indexOf("!") + 2);
-
-            // Create a temporary directory to extract the webapp resources
-            File tempDir = Files.createTempDirectory("webapp").toFile();
-            tempDir.deleteOnExit();
-
-            // Extract the JAR entry to the temporary directory
-            try (java.util.jar.JarFile jar = new java.util.jar.JarFile(new File(jarPath))) {
-                java.util.Enumeration<java.util.jar.JarEntry> entries = jar.entries();
-                while (entries.hasMoreElements()) {
-                    java.util.jar.JarEntry entry = entries.nextElement();
-                    if (entry.getName().startsWith(entryPath) && !entry.isDirectory()) {
-                        File file = new File(tempDir, entry.getName().substring(entryPath.length()));
-                        file.getParentFile().mkdirs();
-                        try (java.io.InputStream is = jar.getInputStream(entry);
-                             java.io.FileOutputStream fos = new java.io.FileOutputStream(file)) {
-                            while (is.available() > 0) {
-                                fos.write(is.read());
-                            }
-                        }
-                    }
-                }
-            }
-            System.out.println(tempDir);
-            //also extract inflector.yaml
-            try (java.io.InputStream is = Main.class.getClassLoader().getResourceAsStream("inflector.yaml")) {
-                if (is != null) {
-                    File inflectorFile = new File("./", "inflector.yaml");
-                    try (java.io.FileOutputStream fos = new java.io.FileOutputStream(inflectorFile)) {
-                        byte[] buffer = new byte[1024];
-                        int bytesRead;
-                        while ((bytesRead = is.read(buffer)) != -1) {
-                            fos.write(buffer, 0, bytesRead);
-                        }
-                    }
-                }
+
+        Context ctx = tomcat.addContext("", null);
+
+        StandardRoot resources = new StandardRoot(ctx);
+        CodeSource src = Main.class.getProtectionDomain().getCodeSource();
+        if (src != null) {
+            URL jar = src.getLocation();
+            String jarPath = new File(jar.toURI()).getAbsolutePath();
+            if (jarPath.endsWith(".jar")) {
+                resources.addJarResources(new JarResourceSet(resources, "/", jarPath, "/webapp"));
+            }else {
+                URL webappUrl = Main.class.getClassLoader().getResource("webapp");
+               String webappDirLocation = new File(webappUrl.toURI()).getAbsolutePath();
+                resources.addPreResources(new DirResourceSet(resources, "/", webappDirLocation, "/"));
             }
+        }
+        ctx.setResources(resources);
+        ctx.addWelcomeFile("index.html");
 
+        // Swagger-Inflector / Jersey servlet
+        Wrapper jerseyServlet = Tomcat.addServlet(ctx, "jersey-container-servlet",
+                "org.glassfish.jersey.servlet.ServletContainer");
 
-            webappDirLocation = tempDir.getAbsolutePath();
-        } else {
-            // Handle the case where the webapp is in the filesystem
-            webappDirLocation = new File(webappUrl.toURI()).getAbsolutePath();
-        }
-        tomcat.addWebapp("", new File(webappDirLocation).getAbsolutePath());
+        jerseyServlet.addInitParameter("javax.ws.rs.Application", "io.swagger.oas.inflector.OpenAPIInflector");
+        jerseyServlet.setLoadOnStartup(1);
+
+        ctx.addServletMappingDecoded("/api/*", "jersey-container-servlet");
+
+        Wrapper defaultServlet = Tomcat.addServlet(ctx, "default", "org.apache.catalina.servlets.DefaultServlet");
+        defaultServlet.setLoadOnStartup(1);
+        ctx.addServletMappingDecoded("/", "default");
 
         System.out.println("Swagger Petstore running at http://localhost:" + port);
         tomcat.start();

jdk_8_maven/em/external/rest/swagger-petstore/src/main/java/em/external/swagger/petstore/ExternalEvoMasterController.java

@@ -9,6 +9,11 @@
 import org.evomaster.client.java.controller.problem.RestProblem;
 import org.evomaster.client.java.sql.DbSpecification;
 
+import java.io.InputStream;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.nio.file.Paths;
+import java.nio.file.StandardCopyOption;
 import java.util.List;
 
 public class ExternalEvoMasterController extends ExternalSutController {
@@ -54,6 +59,7 @@ public static void main(String[] args) {
     private final int timeoutSeconds;
     private final int sutPort;
     private  String jarLocation;
+    private final String CONFIG_FILE = "inflector.yaml";
 
     private List<DbSpecification> dbSpecification;
 
@@ -79,6 +85,7 @@ public ExternalEvoMasterController(
         this.timeoutSeconds = timeoutSeconds;
         setControllerPort(controllerPort);
         setJavaCommand(command);
+        createConfigurationFile();
     }
 
     @Override
@@ -88,9 +95,30 @@ public String[] getInputParameters() {
         };
     }
 
+    private void createConfigurationFile() {
+
+        //save config to same folder of JAR file
+        Path path = getConfigPath();
+
+        try(InputStream is = this.getClass().getResourceAsStream("/"+ CONFIG_FILE )){
+            Files.copy(is, path, StandardCopyOption.REPLACE_EXISTING);
+        } catch (Exception e){
+            throw new RuntimeException(e);
+        }
+    }
+
+    private Path getConfigPath(){
+        return Paths.get(jarLocation)
+                .toAbsolutePath()
+                .getParent()
+                .resolve(CONFIG_FILE)
+                .normalize();
+    }
+
     @Override
     public String[] getJVMParameters() {
         return new String[]{
+                "-Dconfig="+getConfigPath().toAbsolutePath().toString(),
         };
     }
 

jdk_8_maven/em/external/rest/swagger-petstore/src/main/resources/inflector.yaml

@@ -0,0 +1,16 @@
+controllerPackage: io.swagger.petstore.controller
+modelPackage:  io.swagger.petstore.model
+swaggerUrl: webapp/openapi.yaml
+
+exposedSpecOptions:
+  useOriginalNotParsed: true
+
+entityProcessors:
+- json
+- yaml
+- xml
+
+swaggerProcessors:
+- io.swagger.petstore.utils.HandleAuthUrlProcessor
+
+rootPath: /api

scripts/dockerize/data/additional_files/swagger-petstore/inflector.yaml

@@ -0,0 +1,16 @@
+controllerPackage: io.swagger.petstore.controller
+modelPackage:  io.swagger.petstore.model
+swaggerUrl: webapp/openapi.yaml
+
+exposedSpecOptions:
+  useOriginalNotParsed: true
+
+entityProcessors:
+- json
+- yaml
+- xml
+
+swaggerProcessors:
+- io.swagger.petstore.utils.HandleAuthUrlProcessor
+
+rootPath: /api

scripts/dockerize/data/sut.csv

@@ -30,4 +30,4 @@ spring-rest-example,TRUE,"","--server.port=8080 --spring.datasource.username=roo
 erc20-rest-service,TRUE,"",--server.port=8080,http://localhost:8080/v2/api-docs,http://localhost:8080,FALSE,,,,,,FALSE,FALSE,
 spring-actuator-demo,TRUE,"",--server.port=8080,http://localhost:8080/v3/api-docs,http://localhost:8080,FALSE,,,,,,FALSE,FALSE,
 webgoat,TRUE,"-Drunning.in.docker=true","--webgoat.port=8080 --webwolf.port=8081 --server.address=""0.0.0.0"" --spring.profiles.active=dev --spring.datasource.driver-class-name=org.h2.Driver --spring.jpa.properties.hibernate.dialect=org.hibernate.dialect.H2Dialect --spring.jpa.properties.jakarta.persistence.schema-generation.scripts.action=none --spring.sql.init.mode=never --spring.datasource.url=""jdbc:h2:file:./test"" --spring.datasource.username=sa --spring.datasource.password",http://localhost:8080/WebGoat/v3/api-docs,http://localhost:8080,TRUE,,,,,,FALSE,FALSE,
-swagger-petstore,TRUE,"","8080",http://localhost:8080//api/v3/openapi.json,http://localhost:8080,FALSE,,,,,,FALSE,FALSE,
+swagger-petstore,TRUE,"","8080",http://localhost:8080//api/v3/openapi.json,http://localhost:8080,TRUE,,,,,,FALSE,FALSE,

statistics/data.csv

@@ -27,7 +27,7 @@ TRUE,scout-api,REST,Java,JDK 8,Maven,93,9736,H2,MIT,49,TRUE,https://github.com/m
 TRUE,spring-actuator-demo,REST,Java,JDK 8,Maven,5,117,,UNDEFINED,2,TRUE,https://github.com/callicoder/spring-boot-actuator-demo
 TRUE,spring-batch-rest,REST,Java,JDK 8,Maven,65,3668,,Apache,5,FALSE,https://github.com/chrisgleissner/spring-batch-rest
 TRUE,spring-rest-example,REST,Java,JDK 17,Maven,32,1426,MySQL,MIT,9,FALSE,https://github.com/phantasmicmeans/spring-boot-restful-api-example
-TRUE,swagger-petstore,REST,Java,JDK 8,Maven,23,1640,,Apache,19,FALSE,https://github.com/swagger-api/swagger-petstore
+TRUE,swagger-petstore,REST,Java,JDK 8,Maven,23,1631,,Apache,19,FALSE,https://github.com/swagger-api/swagger-petstore
 TRUE,genome-nexus,REST,Java,JDK 8,Maven,405,30004,MongoDB,MIT,23,FALSE,https://github.com/genome-nexus/genome-nexus
 TRUE,market,REST,Java,JDK 11,Maven,124,9861,H2,MIT,13,TRUE,https://github.com/aleksey-lukyanets/market
 TRUE,petclinic-graphql,GraphQL,Java,JDK 8,Maven,89,5212,PostgreSQL,Apache,15,FALSE,https://github.com/spring-petclinic/spring-petclinic-graphql

statistics/table_emb.md

@@ -27,7 +27,7 @@
 |__bibliothek__|REST|2176|33|8|Java|JDK 17|Gradle|MongoDB||
 |__restcountries__|REST|1977|24|22|Java|JDK 8|Maven|||
 |__reservations-api__|REST|1853|39|7|Java|JDK 11|Gradle|MongoDB|✓|
-|__swagger-petstore__|REST|1640|23|19|Java|JDK 8|Maven|||
+|__swagger-petstore__|REST|1631|23|19|Java|JDK 8|Maven|||
 |__session-service__|REST|1471|15|8|Java|JDK 8|Maven|MongoDB||
 |__spring-rest-example__|REST|1426|32|9|Java|JDK 17|Maven|MySQL||
 |__erc20-rest-service__|REST|1378|7|13|Java|JDK 8|Gradle|||