Update normal version

Author: Warvito

README.md

@@ -19,6 +19,7 @@ TODO LIST:
 - [ ] Add synthetic sentences based on other source of information
 - [ ] Maybe use LLM to augment the reports
 - [ ] Add warmup time for the diffusion model
+- [ ] Include images from ChestX-ray14 https://nihcc.app.box.com/v/ChestXray-NIHCC/folder/36938765345
 
 
 ## C1

configs/stage1/aekl_v0.yaml

@@ -8,7 +8,7 @@ stage1:
     spatial_dims: 2
     in_channels: 1
     out_channels: 1
-    num_channels: [64, 128, 128, 128]
+    num_channels: [64, 128, 128, 256]
     latent_channels: 3
     num_res_blocks: 2
     attention_levels: [False, False, False, False]
@@ -22,11 +22,6 @@ discriminator:
     num_layers_d: 3
     in_channels: 1
     out_channels: 1
-    kernel_size: 4
-    activation: "LEAKYRELU"
-    norm: "BATCH"
-    bias: False
-    padding: 1
 
 perceptual_network:
   params:

src/python/testing/generate_sample_local.py

@@ -103,3 +103,13 @@
 
 plt.imshow(sample.cpu()[0, 0, :, :], cmap="gray", vmin=0, vmax=1)
 plt.show()
+
+
+torch.save(
+    diffusion.state_dict(),
+    "/media/walter/Storage/Projects/GenerativeModels/model-zoo/models/cxr_image_synthesis_latent_diffusion_model/models/diffusion_model.pth",
+)
+torch.save(
+    stage1.state_dict(),
+    "/media/walter/Storage/Projects/GenerativeModels/model-zoo/models/cxr_image_synthesis_latent_diffusion_model/models/autoencoder.pth",
+)

src/python/training/training_functions_old_disc.py

@@ -4,28 +4,13 @@
 import torch
 import torch.nn as nn
 import torch.nn.functional as F
-from pynvml.smi import nvidia_smi
 from tensorboardX import SummaryWriter
 from torch.cuda.amp import GradScaler, autocast
 from tqdm import tqdm
+from training_functions import get_lr, print_gpu_memory_report
 from util import log_reconstructions
 
 
-def get_lr(optimizer):
-    for param_group in optimizer.param_groups:
-        return param_group["lr"]
-
-
-def print_gpu_memory_report():
-    if torch.cuda.is_available():
-        nvsmi = nvidia_smi.getInstance()
-        data = nvsmi.DeviceQuery("memory.used, memory.total, utilization.gpu")["gpu"]
-        print("Memory report")
-        for i, data_by_rank in enumerate(data):
-            mem_report = data_by_rank["fb_memory_usage"]
-            print(f"gpu:{i} mem(%) {int(mem_report['used'] * 100.0 / mem_report['total'])}")
-
-
 # ----------------------------------------------------------------------------------------------------------------------
 # AUTOENCODER KL
 # ----------------------------------------------------------------------------------------------------------------------

src/python/training/training_functions_original_disc.py

@@ -4,28 +4,13 @@
 import torch
 import torch.nn as nn
 import torch.nn.functional as F
-from pynvml.smi import nvidia_smi
 from tensorboardX import SummaryWriter
 from torch.cuda.amp import GradScaler, autocast
 from tqdm import tqdm
+from training_functions import get_lr, print_gpu_memory_report
 from util import log_reconstructions
 
 
-def get_lr(optimizer):
-    for param_group in optimizer.param_groups:
-        return param_group["lr"]
-
-
-def print_gpu_memory_report():
-    if torch.cuda.is_available():
-        nvsmi = nvidia_smi.getInstance()
-        data = nvsmi.DeviceQuery("memory.used, memory.total, utilization.gpu")["gpu"]
-        print("Memory report")
-        for i, data_by_rank in enumerate(data):
-            mem_report = data_by_rank["fb_memory_usage"]
-            print(f"gpu:{i} mem(%) {int(mem_report['used'] * 100.0 / mem_report['total'])}")
-
-
 def hinge_d_loss(logits_real, logits_fake):
     loss_real = torch.mean(F.relu(1.0 - logits_real))
     loss_fake = torch.mean(F.relu(1.0 + logits_fake))