Update version to 0.1.1 for Whisper API integration and AlphaFold fixes

Author: devin-ai-integration[bot]

README.md

@@ -1,11 +1,13 @@
-# NeuroFlex: Advanced Neural Network Framework (v0.1.0)
+# NeuroFlex: Advanced Neural Network Framework (v0.1.1)
 
 NeuroFlex is a cutting-edge neural network framework built on JAX and Flax, designed to address key challenges in modern machine learning: interpretability, generalization, robustness, and fairness. This project showcases state-of-the-art techniques and methodologies for creating more transparent, reliable, and ethical AI systems. Version 0.1.0 introduces exciting new capabilities in generative AI, consciousness simulation, and advanced problem-solving.
 
 ![image](neuroflex-architecture-svg.svg)
 
 ## Latest Updates
 
+- Whisper API integration for advanced speech recognition and transcription
+- Improvements and fixes to AlphaFold integration for protein structure prediction
 - Generative AI capabilities for creative problem-solving
 - Advanced consciousness simulation for cognitive modeling
 - Sentence piece integration for improved natural language processing

setup.py

@@ -2,7 +2,7 @@
 
 setup(
     name="neuroflex",
-    version="0.1.0",
+    version="0.1.1",
     author="kasinadhsarma",
     author_email="kasinadhsarma@gmail.com",
     description="An advanced neural network framework with interpretability, generalization, robustness, and fairness features",
@@ -31,8 +31,6 @@
         "tensorflow-cpu",
         "keras",
         "gym",
-        "pytest",
-        "flake8",
         "numpy",
         "scipy",
         "matplotlib",
@@ -54,10 +52,8 @@
         "ete3",
         "xarray",
         "torch",
-        "git+https://github.com/google-deepmind/alphafold.git"
-        "git+https://github.com/PrithivirajDamodaran/Gramformer.git"
-        # If needed, install alphafold separately or specify a PyPI-compatible version
         "shap",
+        "whisper",
     ],
     extras_require={
         'dev': [