IBSplot

[dosshra]

Hello
running: IBSplot --IBSpy_counts "PI414721.ibs.tsv.gz" --window_size 100000 --output gmm_ibs.tsv.gz --reference ~/SV2/Wheat.Svevo.CHROMOSOMES_pacbio.fasta --query samp --plot_output gmm_plots.pdf

I get:

Traceback (most recent call last):
File "/home/user/anaconda3/bin/IBSplot", line 33, in
sys.exit(load_entry_point('IBSpy', 'console_scripts', 'IBSplot')())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/user/IBSpy/IBSpy/IBSpy_plot_window_results.py", line 29, in main
IBS_results = IBSpyResults(args.IBSpy_counts, args.window_size, args.filter_counts)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
TypeError: IBSpyResults.init() takes 3 positional arguments but 4 were given

Thank you

[yanyew]

I met the same issue. Have you find out the solution?

[dosshra]

I did not find a solution within ISBpy. I just loaded the results to R and made the plots there.