restore bam/sam handing

Author: TomKellyGenetics

src/bam/mod.rs

@@ -208,7 +208,7 @@ impl Reader {
         unsafe {
             htslib::sam_read1(
                 _self.htsfile(),
-                _self.header().inner_ptr() as *mut hts_sys::bam_hdr_t,
+                _self.header().inner_ptr() as *mut hts_sys::sam_hdr_t,
                 record,
             )
         }
@@ -270,7 +270,7 @@ impl Read for Reader {
         match unsafe {
             htslib::sam_read1(
                 self.htsfile,
-                self.header().inner_ptr() as *mut hts_sys::bam_hdr_t,
+                self.header().inner_ptr() as *mut hts_sys::sam_hdr_t,
                 record.inner_ptr_mut(),
             )
         } {
@@ -431,7 +431,7 @@ impl IndexedReader {
         let itr = unsafe {
             htslib::sam_itr_querys(
                 self.idx,
-                self.header().inner_ptr() as *mut hts_sys::bam_hdr_t,
+                self.header().inner_ptr() as *mut hts_sys::sam_hdr_t,
                 rptr,
             )
         };
@@ -454,7 +454,7 @@ impl IndexedReader {
             None => unsafe {
                 htslib::sam_read1(
                     _self.htsfile,
-                    _self.header().inner_ptr() as *mut hts_sys::bam_hdr_t,
+                    _self.header().inner_ptr() as *mut hts_sys::sam_hdr_t,
                     record,
                 )
             }, // ordinary reading