Syntax (#26)

* Fixing syntax

* Syntax

Author: yaront

src/kinase_library/modules/enrichment.py

@@ -640,7 +640,7 @@ def plot_3x3_volcanos(dp_data, kin_type, kl_method, kl_thresh, dp_lfc_col, dp_lf
 
     for i,(lfc,pval) in enumerate(zip(dp_lfc_thresh,dp_pval_thresh)):
 
-        subfigs[i].suptitle(r'$\bf{' + f'DE\ logFC\ threshold:\ {lfc}' + f'\ /\ DE\ p-value\ threshold:\ {pval}'*(dp_pval_col is not None) + '}$')
+        subfigs[i].suptitle(r'$\bf{' + f'DE logFC threshold: {lfc}' + f' / DE p-value threshold: {pval}'*(dp_pval_col is not None) + '}$')
         ax = subfigs[i].subplots(nrows=1, ncols=3)
 
         print(f'\nLogFC threshold: {lfc}' + f' / p-value threshold: {pval}'*(dp_pval_col is not None))

src/notebooks/binary_enrichment.ipynb

@@ -1234,14 +1234,6 @@
    "source": [
     "enrich_results.enriched_subs(kinases=['PKCE','PKCH','PKCI'], save_to_excel=True, output_dir='/Users/usr/Desktop/', file_prefix='Phorbol Ester subs')"
    ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "410f47e8-9a62-4164-baeb-3f50ae7c1d59",
-   "metadata": {},
-   "outputs": [],
-   "source": []
   }
  ],
  "metadata": {
@@ -1260,7 +1252,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.13"
+   "version": "3.12.8"
   }
  },
  "nbformat": 4,

src/notebooks/differential_phosphorylation.ipynb

@@ -2102,7 +2102,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.13"
+   "version": "3.12.8"
   }
  },
  "nbformat": 4,