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> **:construction: Maintenance Update: :construction:**
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> The CoVigator pipeline is presently not under active maintenance. Users are
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> advised that there won't be regular updates or bug fixes.
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> We welcome any contibutions of interested individuals. Feel free to fork
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> the project to continue its development or submit patches to the orginal repository.
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> As our field of research is cancer in general, we would be grateful for any help in making this pipeline compatible with other viruses.
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> Thank you for your understanding.
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![CoVigator logo](images/CoVigator_logo_txt_nobg.png "CoVigator logo")
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# CoVigator pipeline: variant detection pipeline for Sars-CoV-2

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