Batch processing with Lung CT Segmenter

Use Lung CT Segmenter's batch processing function to initiate easy sequential lung segmentation with a few mouseclicks and the following workflow:

• Check "use AI" and select an appropriate AI engine
• Uncheck "Airway segmentation", as it would need manual input
• Select the input folder
• Select the output folder
• Enable "Test run" if required, disable "Test run" if all input subfolders should be processed (may take a long time)
• Select "Input is NIFTI" as required
• Press "Batch process"

The structure of the input folder should contain an immediate subdirectory for each dataset. In the subdirectory, either a "CT.nrrd" file or a ct.nii.gz" file must be present. Input files must be placed in subdirectories only and not into the input folder directly.