Batch processing with Lung CT Segmenter
Use Lung CT Segmenter's batch processing function for easy sequential lung segmentation with a few mouse clicks and the following workflow:
- Check "use AI" and select an appropriate AI engine
- Uncheck "Airway segmentation", as it would need manual input
- Select the input folder
- Select the output folder
- Enable "Testmode" if required
- Disable "Testmode" if all subfolders of the input directory should be processed (this may take a long time)
- Select "Input is NIFTI" if required. In this case, NIFTI output will be generated.
- Press "Batch process"
The structure of the input folder should contain one immediate subdirectory for each dataset. In each subdirectory, either a "CT.nrrd" file or a "ct.nii.gz" file must be present. CT input files that are placed into the input folder directly (without subdirectories) will be ignored.
The structure of the input folder will be mirrored to the output folder during processing.
The content of an output subfolder of the output folder could look like this ("Input is NIFTI" was checked):
