Batch processing with Lung CT Segmenter

Use Lung CT Segmenter's batch processing function to initiate easy sequential lung segmentation with a few mouseclicks and the following workflow:

• Check "use AI" and select an appropriate AI engine
• Uncheck "Airway segmentation", as it would need manual input
• Select the input folder
• Select the output folder
• Enable "Testmode" if required
• Disable "Testmode" if all subfolders of the input directory should be processed (this may take a long time)
• Select "Input is NIFTI" if required. In this case, NIFTI output will be generated.
• Press "Batch process"

The structure of the input folder should contain an immediate subdirectory for each dataset. In the subdirectory, either a "CT.nrrd" file or a ct.nii.gz" file must be present. Input files must be placed in subdirectories only and not into the input folder directly.