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Reorganizing README
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README.md

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# Getting Recycler
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You can download Recycler [here](https://github.com/Shamir-Lab/Recycler/releases/download/Recycler-v0.6/Recycler-0.6.zip) or clone it via the link below. In case you download the zip, unzip the file before following the instructions below (ignoring the 'git clone' line)
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# Installation
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To install Recycler and scripts follow the following instructions.
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git clone https://github.com/rozovr/Recycler.git
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python setup.py install
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# Quick start
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Assuming we have prepared a filtered BAM file (aln-pe.bam) prepared as described [below](#bam-prep) and an isolate assembly graph (e.g., assembly_graph.fastg from [SPAdes 3.6+](http://bioinf.spbau.ru/en/spades)), and that 55 was the maximum k-mer length used by the assembler,
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* [samtools 0.1.19+](https://github.com/samtools/samtools)
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* [SPAdes 3.6.2+](http://bioinf.spbau.ru/en/spades)
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# Installation
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To install Recycler and scripts follow the following instructions.
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git clone https://github.com/rozovr/Recycler.git
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python setup.py install
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# Detailed usage
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recycle.py -g GRAPH -k MAX_K -b BAM [-l LENGTH] [-m MAX_CV] [-i ISO]

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