@@ -57,7 +57,7 @@ First thing first, let's make sure our software are usable.
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```sh
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(dcm2bids) sam:~$ dcm2bids -v
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- dcm2bids version: 3.0.3
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+ dcm2bids version: 3.1.0
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Based on BIDS version: v1.8.0
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(dcm2bids) sam:~$ parallel --version
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GNU parallel 20230722
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INFO | Running the following command: /home/sam/miniconda3/envs/dcm2bids/bin/dcm2bids_scaffold -o tuto-parallel
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INFO | OS version: Linux-5.15.0-83-generic-x86_64-with-glibc2.31
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INFO | Python version: 3.10.4 | packaged by conda-forge | (main, Mar 24 2022, 17:39:04) [GCC 10.3.0]
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- INFO | dcm2bids version: 3.0.3
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+ INFO | dcm2bids version: 3.1.0
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INFO | Checking for software update
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INFO | Currently using the latest version of dcm2bids.
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INFO | The files used to create your BIDS directory were taken from https://github.com/bids-standard/bids-starter-kit.
@@ -128,7 +128,7 @@ This step is optional but it makes things easier when all the data are within
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the same directory. The ` sourcedata ` directory is meant to contain your DICOM
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files. It doesn't mean you have to duplicate your files there but it is nice to
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[ symlink] ( https://en.wikipedia.org/wiki/Symbolic_link ) them there. That being
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- said, feel free to let your DICOM directories whereever they are, and use that
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+ said, feel free to let your DICOM directories wherever they are, and use that
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as an input to your dcm2bids command.
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=== "Command"
@@ -195,8 +195,8 @@ created for my data to `code/config_dcm2bids_t1w.json`. This config file aims to
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}
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```
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- Make sure that your config file runs succesfully on one participant at least
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- before moving onto parallizing .
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+ Make sure that your config file runs successfully on one participant at least
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+ before moving onto parallelizing .
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In my case,
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` dcm2bids --auto_extract_entities -c code/config_dcm2bids_t1w.json -d sourcedata/punk_proj/PUNK041.tar.bz2 -p 041 `
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