[GITFLOW]merging 'release-0.4.0' into 'master'

Author: ciSymeda

README.md

@@ -47,14 +47,19 @@ For information on what libs are used see pom.xml in sormas-base project: https:
     * ``cd /root/deploy/sormas/backup``
     * ``sudo -u postgres pg_dump -Fc -b sormas_db >  "sormas_db_"`date +"%Y-%m-%d_%H-%M-%S"`".dump"``
     * ``cd /root/deploy/sormas/$(date +%F)``	
-* Find out current schema version of database:
-    * ``sudo -u postgres psql sormas_db``
-    * ``SELECT * from schema_version ORDER BY version_number DESC LIMIT 1;``
-    * ``\q``
-* **Edit sql/sormas_schema.sql**
-    * ``Remove everything until after the INSERT with the read schema version``
-    * ``Surround the remaining with BEGIN; and COMMIT;``
-* Update the Database schema: ``sudo -u postgres psql sormas_db < sql/sormas_schema.sql``
+* Update the database schema
+    * make the schema update script executable: ``chmod +x sql/database-update.sh``
+    * execute the update script: ``sql/database-update.sh``
+    * confirm schema update by pressing enter when asked
+* Alternative: Manual database update
+    * Find out current schema version of database:
+        * ``sudo -u postgres psql sormas_db``
+        * ``SELECT * from schema_version ORDER BY version_number DESC LIMIT 1;``
+        * ``\q``
+    * Edit sql/sormas_schema.sql
+        * ``Remove everything until after the INSERT with the read schema version``
+        * ``Surround the remaining with BEGIN; and COMMIT;``
+    * Update the Database schema: ``sudo -u postgres psql sormas_db < sql/sormas_schema.sql``
 * If something goes wrong, restorte the database using ``sudo -u postgres pg_restore -Fc -d sormas_db < sormas_db_....``
 
 #### Web Applications

sormas-api/pom.xml

@@ -2,7 +2,7 @@
 	<parent>
 		<groupId>de.symeda.sormas</groupId>
 		<artifactId>sormas-base</artifactId>
-		<version>0.3.0</version>
+		<version>0.4.0</version>
 		<relativePath>../sormas-base</relativePath>
 	</parent>
 	<modelVersion>4.0.0</modelVersion>

sormas-api/src/main/java/de/symeda/sormas/api/caze/CaseDataDto.java

@@ -32,6 +32,7 @@ public class CaseDataDto extends CaseReferenceDto {
 	public static final String COMMUNITY = "community";
 	public static final String HEALTH_FACILITY = "healthFacility";
 	public static final String HEALTH_FACILITY_DETAILS = "healthFacilityDetails";
+	public static final String NONE_HEALTH_FACILITY_DETAILS = "noneHealthFacilityDetails";
 	public static final String REPORTING_USER = "reportingUser";
 	public static final String REPORT_DATE = "reportDate";
 	public static final String INVESTIGATED_DATE = "investigatedDate";
@@ -45,6 +46,8 @@ public class CaseDataDto extends CaseReferenceDto {
 	public static final String MEASLES_DOSES = "measlesDoses";
 	public static final String MEASLES_VACCINATION_INFO_SOURCE = "measlesVaccinationInfoSource";
 	public static final String EPID_NUMBER = "epidNumber";
+	public static final String REPORT_LAT = "reportLat";
+	public static final String REPORT_LON = "reportLon";
 
 	private PersonReferenceDto person;
 	private CaseClassification caseClassification;
@@ -77,6 +80,9 @@ public class CaseDataDto extends CaseReferenceDto {
 	private UserReferenceDto surveillanceOfficer;
 	private UserReferenceDto caseOfficer;
 
+	private Float reportLat;
+	private Float reportLon;
+	
 	public CaseClassification getCaseClassification() {
 		return caseClassification;
 	}
@@ -253,4 +259,20 @@ public void setEpidNumber(String epidNumber) {
 		this.epidNumber = epidNumber;
 	}
 
+	public Float getReportLat() {
+		return reportLat;
+	}
+
+	public void setReportLat(Float reportLat) {
+		this.reportLat = reportLat;
+	}
+
+	public Float getReportLon() {
+		return reportLon;
+	}
+
+	public void setReportLon(Float reportLon) {
+		this.reportLon = reportLon;
+	}
+
 }

sormas-api/src/main/java/de/symeda/sormas/api/caze/CaseFacade.java

@@ -6,14 +6,16 @@
 import javax.ejb.Remote;
 
 import de.symeda.sormas.api.Disease;
+import de.symeda.sormas.api.facility.FacilityReferenceDto;
+import de.symeda.sormas.api.region.CommunityReferenceDto;
 import de.symeda.sormas.api.user.UserReferenceDto;
 
 @Remote
 public interface CaseFacade {
 
 	List<CaseDataDto> getAllCasesAfter(Date date, String userUuid);
 
-	List<CaseDataDto> getAllCasesByDiseaseAfter(Date date, Disease disease, String userUuid);
+	List<CaseDataDto> getAllCasesByDisease(Disease disease, String userUuid);
 
 	List<CaseDataDto> getAllCasesBetween(Date fromDate, Date toDate, Disease disease, String userUuid);
 
@@ -30,4 +32,8 @@ public interface CaseFacade {
 	CaseDataDto getByPersonAndDisease(String personUuid, Disease disease, String userUuid);
 
 	List<String> getAllUuids(String userUuid);
+	
+	CaseDataDto moveCase(CaseReferenceDto caze, CommunityReferenceDto community, FacilityReferenceDto facility, String facilityDetails, UserReferenceDto surveillanceOfficer);
+
+	List<CaseDataDto> getByUuids(List<String> uuids);
 }

sormas-api/src/main/java/de/symeda/sormas/api/contact/ContactDto.java

@@ -22,10 +22,13 @@ public class ContactDto extends ContactReferenceDto {
 	public static final String CONTACT_PROXIMITY = "contactProximity";
 	public static final String CONTACT_CLASSIFICATION = "contactClassification";
 	public static final String FOLLOW_UP_STATUS = "followUpStatus";
+	public static final String FOLLOW_UP_COMMENT = "followUpComment";
 	public static final String FOLLOW_UP_UNTIL = "followUpUntil";
 	public static final String CONTACT_OFFICER = "contactOfficer";
 	public static final String DESCRIPTION = "description";
 	public static final String RELATION_TO_CASE = "relationToCase";
+	public static final String REPORT_LAT = "reportLat";
+	public static final String REPORT_LON = "reportLon";
 
 	private PersonReferenceDto person;
 	private CaseReferenceDto caze;
@@ -37,10 +40,15 @@ public class ContactDto extends ContactReferenceDto {
 	@Diseases({Disease.EVD,Disease.LASSA,Disease.CHOLERA})
 	private FollowUpStatus followUpStatus;
 	@Diseases({Disease.EVD,Disease.LASSA,Disease.CHOLERA})
+	private String followUpComment;
+	@Diseases({Disease.EVD,Disease.LASSA,Disease.CHOLERA})
 	private Date followUpUntil;
+	@Diseases({Disease.EVD,Disease.LASSA,Disease.CHOLERA})
 	private UserReferenceDto contactOfficer;
 	private String description;
 	private ContactRelation relationToCase;
+	private Float reportLat;
+	private Float reportLon;
 
 	public PersonReferenceDto getPerson() {
 		return person;
@@ -115,5 +123,23 @@ public ContactRelation getRelationToCase() {
 	public void setRelationToCase(ContactRelation relationToCase) {
 		this.relationToCase = relationToCase;
 	}
+	public Float getReportLat() {
+		return reportLat;
+	}
+	public void setReportLat(Float reportLat) {
+		this.reportLat = reportLat;
+	}
+	public Float getReportLon() {
+		return reportLon;
+	}
+	public void setReportLon(Float reportLon) {
+		this.reportLon = reportLon;
+	}
+	public String getFollowUpComment() {
+		return followUpComment;
+	}
+	public void setFollowUpComment(String followUpComment) {
+		this.followUpComment = followUpComment;
+	}
 
 }

sormas-api/src/main/java/de/symeda/sormas/api/contact/ContactFacade.java

@@ -35,4 +35,6 @@ public interface ContactFacade {
 	List<String> getAllUuids(String userUuid);
 
 	void generateContactFollowUpTasks();
+
+	List<ContactDto> getByUuids(List<String> uuids);
 }

sormas-api/src/main/java/de/symeda/sormas/api/event/EventDto.java

@@ -28,6 +28,8 @@ public class EventDto extends EventReferenceDto {
 	public static final String DISEASE = "disease";
 	public static final String SURVEILLANCE_OFFICER = "surveillanceOfficer";
 	public static final String TYPE_OF_PLACE_TEXT = "typeOfPlaceText";
+	public static final String REPORT_LAT = "reportLat";
+	public static final String REPORT_LON = "reportLon";
 
 	private EventType eventType;
 	private EventStatus eventStatus;
@@ -44,6 +46,8 @@ public class EventDto extends EventReferenceDto {
 	private Disease disease;
 	private UserReferenceDto surveillanceOfficer;
 	private String typeOfPlaceText;
+	private Float reportLat;
+	private Float reportLon;
 
 	public EventType getEventType() {
 		return eventType;
@@ -163,4 +167,20 @@ public void setTypeOfPlaceText(String typeOfPlaceText) {
 		this.typeOfPlaceText = typeOfPlaceText;
 	}
 
+	public Float getReportLat() {
+		return reportLat;
+	}
+
+	public void setReportLat(Float reportLat) {
+		this.reportLat = reportLat;
+	}
+
+	public Float getReportLon() {
+		return reportLon;
+	}
+
+	public void setReportLon(Float reportLon) {
+		this.reportLon = reportLon;
+	}
+
 }

sormas-api/src/main/java/de/symeda/sormas/api/event/EventFacade.java

@@ -25,4 +25,6 @@ public interface EventFacade {
 
 	List<String> getAllUuids(String userUuid);
 
+	List<EventDto> getByUuids(List<String> uuids);
+
 }

sormas-api/src/main/java/de/symeda/sormas/api/event/EventParticipantFacade.java

@@ -18,5 +18,7 @@ public interface EventParticipantFacade {
 
 	List<String> getAllUuids(String userUuid);
 
+	List<EventParticipantDto> getByUuids(List<String> uuids);
+
 
 }

sormas-api/src/main/java/de/symeda/sormas/api/facility/FacilityDto.java

@@ -2,6 +2,7 @@
 
 import javax.xml.bind.annotation.XmlTransient;
 
+import de.symeda.sormas.api.I18nProperties;
 import de.symeda.sormas.api.region.CommunityReferenceDto;
 import de.symeda.sormas.api.region.DistrictReferenceDto;
 import de.symeda.sormas.api.region.RegionReferenceDto;
@@ -12,6 +13,9 @@ public class FacilityDto extends FacilityReferenceDto {
 
 	public static final String I18N_PREFIX = "Facility";
 	public static final String OTHER_FACILITY_UUID = "SORMAS-CONSTID-OTHERS-FACILITY";
+	public static final String NONE_FACILITY_UUID = "SORMAS-CONSTID-ISNONE-FACILITY";
+	public static final String OTHER_FACILITY = "OTHER_FACILITY";
+	public static final String NO_FACILITY = "NO_FACILITY";
 
 	private String name;
 	private RegionReferenceDto region;
@@ -90,6 +94,13 @@ public void setPublicOwnership(boolean publicOwnership) {
 
 	@Override
 	public String toString() {
+		if (getUuid().equals(OTHER_FACILITY_UUID)) {
+			return I18nProperties.getPrefixFieldCaption(I18N_PREFIX, OTHER_FACILITY);
+		}
+		if (getUuid().equals(NONE_FACILITY_UUID)) {
+			return I18nProperties.getPrefixFieldCaption(I18N_PREFIX, NO_FACILITY);
+		}
+		
 		StringBuilder caption = new StringBuilder();
 		caption.append(name);
 		if (community != null) {

sormas-api/src/main/java/de/symeda/sormas/api/facility/FacilityFacade.java

@@ -13,8 +13,8 @@ public interface FacilityFacade {
 
 	List<FacilityReferenceDto> getAll();
 
-    List<FacilityReferenceDto> getHealthFacilitiesByCommunity(CommunityReferenceDto community, boolean includeOthers);
-    List<FacilityReferenceDto> getHealthFacilitiesByDistrict(DistrictReferenceDto district, boolean includeOthers);
+    List<FacilityReferenceDto> getHealthFacilitiesByCommunity(CommunityReferenceDto community, boolean includeStaticFacilities);
+    List<FacilityReferenceDto> getHealthFacilitiesByDistrict(DistrictReferenceDto district, boolean includeStaticFacilities);
     List<FacilityReferenceDto> getAllLaboratories();
 
 	List<FacilityDto> getAllByRegionAfter(String regionUuid, Date date);

sormas-api/src/main/java/de/symeda/sormas/api/hospitalization/PreviousHospitalizationDto.java

@@ -4,6 +4,9 @@
 
 import de.symeda.sormas.api.DataTransferObject;
 import de.symeda.sormas.api.facility.FacilityReferenceDto;
+import de.symeda.sormas.api.region.CommunityReferenceDto;
+import de.symeda.sormas.api.region.DistrictReferenceDto;
+import de.symeda.sormas.api.region.RegionReferenceDto;
 import de.symeda.sormas.api.utils.YesNoUnknown;
 
 public class PreviousHospitalizationDto extends DataTransferObject {
@@ -14,12 +17,18 @@ public class PreviousHospitalizationDto extends DataTransferObject {
 
 	public static final String ADMISSION_DATE = "admissionDate";
 	public static final String DISCHARGE_DATE = "dischargeDate";
+	public static final String REGION = "region";
+	public static final String DISTRICT = "district";
+	public static final String COMMUNITY = "community";
 	public static final String HEALTH_FACILITY = "healthFacility";
 	public static final String ISOLATED = "isolated";
 	public static final String DESCRIPTION = "description";
 
 	private Date admissionDate;
 	private Date dischargeDate;
+	private RegionReferenceDto region;
+	private DistrictReferenceDto district;
+	private CommunityReferenceDto community;
 	private FacilityReferenceDto healthFacility;
 	private YesNoUnknown isolated;
 	private String description;
@@ -38,6 +47,27 @@ public void setDischargeDate(Date dischargeDate) {
 		this.dischargeDate = dischargeDate;
 	}
 
+	public RegionReferenceDto getRegion() {
+		return region;
+	}
+	public void setRegion(RegionReferenceDto region) {
+		this.region = region;
+	}
+	
+	public DistrictReferenceDto getDistrict() {
+		return district;
+	}
+	public void setDistrict(DistrictReferenceDto district) {
+		this.district = district;
+	}
+	
+	public CommunityReferenceDto getCommunity() {
+		return community;
+	}
+	public void setCommunity(CommunityReferenceDto community) {
+		this.community = community;
+	}
+	
 	public FacilityReferenceDto getHealthFacility() {
 		return healthFacility;
 	}
@@ -58,5 +88,5 @@ public String getDescription() {
 	public void setDescription(String description) {
 		this.description = description;
 	}
-	
+
 }

sormas-api/src/main/java/de/symeda/sormas/api/person/PersonFacade.java

@@ -30,4 +30,6 @@ public interface PersonFacade {
     PersonDto savePerson(PersonDto dto);
 
 	List<String> getAllUuids(String userUuid);
+
+	List<PersonDto> getByUuids(List<String> uuids);
 }

sormas-api/src/main/java/de/symeda/sormas/api/region/CommunityFacade.java

@@ -11,4 +11,6 @@ public interface CommunityFacade {
     List<CommunityReferenceDto> getAllByDistrict(String districtUuid);
 
 	List<CommunityDto> getAllAfter(Date date);
+	
+	CommunityDto getByUuid(String uuid);
 }