Running Kallisto on Raven (RStudio)

[ocattau]

How to run kallisto on Raven server
I saved my fasta file in my root directory for this one time /home/olivia/xxx.fasta

#load kallisto

cd /home/shared/kallisto/test #location of kallisto on Raven
 /home/shared/kallisto/kallisto \
index -i ../documents/data/transcriptome_v5.idx /home/olivia/Pgenerosa_transcriptome_v5.fasta