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README.md

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## :bulb: What is MetaTag?
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This repository contains tools to assign taxonomy and function annotations to short reads through pylogenetic tree evolutionary placement
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This repository contains tools to assign taxonomy and function annotations to short reads through pylogenetic tree evolutionary placement.
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## :wrench: Setup
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The easiest way to use MetaTag is through the provided [docker](https://www.docker.com/) container. To use it, pull the image:
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conda activate metatag
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(metatag) bash tests/run_test.sh
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```
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or through Python's unittest module:
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```bash
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conda activate metatag
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(metatag) python -m unittest tests/test_pipeline.py
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```
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It should produce a final tree with query sequences placed on it, as well as a bunch of intermediary files without any errors.
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## :rocket: Usage

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