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Should be adjlist, not smiles. Fix indentation.
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src/Parse.jl

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@@ -292,6 +292,7 @@ function readinputyml(fname::String)
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d["atomnums"],d["bondnum"],d["molecularweight"] = getatomdictadjlist(d["adjlist"])
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catch
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@warn("failed to generate molecular information from smiles for species $spcname")
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@warn("failed to generate molecular information from adjlist for species $spcname")
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end
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elseif "smiles" in keys(d)
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try

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