Create article.yaml

Author: oliviaguest

10.5281_zenodo.3885793/article.yaml

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+# To be filled by the author(s) at the time of submission
+# -------------------------------------------------------
+
+# Title of the article:
+#  - For a successful replication, it should be prefixed with "[Re]"
+#  - For a failed replication, it should be prefixed with "[¬Re]"
+#  - For other article types, no instruction (but please, not too long)
+title: "[Re] Measures for investigating the contextual modulation of information transmission"
+
+# List of authors with name, orcid number, email and affiliation
+# Affiliation "*" means contact author
+authors:
+  - name: Sepehr Mahmoudian
+    orcid: 0000-0003-0884-9343
+    email: sepehr.mahmoudian@gmail.com
+    affiliations: 1,2,*
+
+# List of affiliations with code (corresponding to author affiliations), name
+# and address. You can also use these affiliations to add text such as "Equal
+# contributions" as name (with no address).
+affiliations:
+  - code:    1
+    name:    Department of Data-driven Analysis of Biological Networks, Campus Institute for Dynamics of Biological Networks, Georg August University Göttingen
+    address: Göttingen, Germany
+
+  - code:    2
+    name:    MEG Unit, Brain Imaging Center, Goethe University Frankfurt
+    address: Frankfurt, Germany
+
+
+# List of keywords (adding the programming language might be a good idea)
+keywords: information theory, contextual amplification, python
+
+# Code URL and DOI/SWH (url is mandatory for replication, doi after acceptance)
+# You can get a DOI for your code from Zenodo, or an SWH identifier from
+# Software Heritage.
+#   see https://guides.github.com/activities/citable-code/
+code:
+  - url: https://github.com/sepehrmn/mahmoudian-2020-rescience
+  - doi:
+  - swh: swh:1:dir:c707f7af830f2cf32cf42c9515cc95ffd5fc5e2c
+
+# Date URL and DOI (optional if no data)
+data:
+  - url:
+  - doi:
+
+# Information about the original article that has been replicated
+replication:
+ - cite: Smyth, D., Phillips, W. A. and Kay, J.(1996)'Measures for investigating the contextual modulation of information transmission',Network:Computation in Neural Systems,7:2,307 — 316 # Full textual citation
+ - bib:  Smyth1996 # Bibtex key (if any) in your bibliography file
+ - url:  https://www.tandfonline.com/doi/abs/10.1088/0954-898X_7_2_011 # URL to the PDF, try to link to a non-paywall version
+ - doi:  10.1088/0954-898X/7/2/011 # Regular digital object identifier
+
+# Don't forget to surround abstract with double quotes
+abstract: "The input to a neuron can be categorized as driving or contextual.
+           There are many ways to write formulations for contextual amplification.
+           information theory can be used to study the different forms
+           of information transmission. Here the original article on using three-way
+           mutual and conditional mutual information to study contextual amplification
+           is replicated and the Python code is made public."
+
+# Bibliography file (yours)
+bibliography: bibliography.bib
+
+# Type of the article
+# Type can be:
+#  * Editorial
+#  * Letter
+#  * Replication
+type: Replication
+
+# Scientific domain of the article (e.g. Computational Neuroscience)
+#  (one domain only & try to be not overly specific)
+domain: Computational Neuroscience
+
+# Coding language (main one only if several)
+language: Python
+
+
+# To be filled by the author(s) after acceptance
+# -----------------------------------------------------------------------------
+
+# For example, the URL of the GitHub issue where review actually occured
+review:
+  - url: https://github.com/ReScience/submissions/issues/29
+
+contributors:
+  - name: Olivia Guest
+    orcid: 0000-0002-1891-0972
+    role: editor
+  - name: Reubs J Walsh
+    orcid: 0000-0002-5592-7562
+    role: reviewer
+  - name: Daniel Schmid
+    orcid: 0000-0002-2439-9453
+    role: reviewer
+  - name: Abdullah Makkeh
+    orcid: 0000-0002-3581-8262
+    role: reviewer
+
+# This information will be provided by the editor
+dates:
+  - received:  April 18, 2020
+  - accepted:  June 5, 2020
+  - published: June 9, 2020
+
+# This information will be provided by the editor
+article:
+  - number: 2 # Article number will be automatically assigned during publication
+  - doi: 10.5281/zenodo.3885793   # DOI from Zenodo
+  - url: https://zenodo.org/record/3885793/files/Reproduction_of_Smyth_et_al__1996.pdf  # Final PDF URL (Zenodo or rescience website?)
+
+# This information will be provided by the editor
+journal:
+  - name:   "ReScience C"
+  - issn:   2430-3658
+  - volume: 6
+  - issue:  3