|
| 1 | +# To be filled by the author(s) at the time of submission |
| 2 | +# ------------------------------------------------------- |
| 3 | + |
| 4 | +# Title of the article: |
| 5 | +# - For a successful replication, it shoudl be prefixed with "[Re]" |
| 6 | +# - For a failed replication, it should be prefixed with "[¬Re]" |
| 7 | +# - For other article types, no instruction (but please, not too long) |
| 8 | +title: "[Rp] Reproducibility report: Estimating friction coefficients |
| 9 | + of mixed globular/chain molecules, such as protein/DNA complexes. [Biophys J 69, 840-848 (1995)]" |
| 10 | + |
| 11 | +# List of authors with name, orcid number, email and affiliation |
| 12 | +# Affiliation "*" means contact author (required even for single-authored papers) |
| 13 | +authors: |
| 14 | + - name: Charles H. Robert |
| 15 | + orcid: 0000-0003-0337-1504 |
| 16 | + email: robert@ibpc.fr |
| 17 | + affiliations: 1,2,* |
| 18 | + |
| 19 | +# List of affiliations with code (corresponding to author affiliations), name |
| 20 | +# and address. You can also use these affiliations to add text such as "Equal |
| 21 | +# contributions" as name (with no address). |
| 22 | +affiliations: |
| 23 | + - code: 1 |
| 24 | + name: CNRS, Université de Paris, Laboratoire de Biochimie Théorique, UPR9080 |
| 25 | + address: 13, rue Pierre et Marie Curie, F-75005 Paris, France |
| 26 | + |
| 27 | + - code: 2 |
| 28 | + name: Institut de Biologie Physico-Chimique, Fondation Edmond de Rothschild, |
| 29 | + address: PSL Research University, Paris, France |
| 30 | + |
| 31 | + |
| 32 | +# List of keywords (adding the programming language might be a good idea) |
| 33 | +keywords: macromolecular structure, protein-DNA assemblies, chromatin, fiber, nucleosome, translational diffusion coefficient, friction coefficient |
| 34 | + |
| 35 | +# Code URL and DOI/SWH (url is mandatory for replication, doi after acceptance) |
| 36 | +# You can get a DOI for your code from Zenodo, or an SWH identifier from |
| 37 | +# Software Heritage. |
| 38 | +# see https://guides.github.com/activities/citable-code/ |
| 39 | +code: |
| 40 | + - url: https://zenodo.org/record/3878075 |
| 41 | + - doi: 10.5281/zenodo.3878075 |
| 42 | + - swh: |
| 43 | + |
| 44 | +# Data URL and DOI (optional if no data) |
| 45 | +data: |
| 46 | + - url: |
| 47 | + - doi: |
| 48 | + |
| 49 | +# Information about the original article that has been replicated |
| 50 | +replication: |
| 51 | + - cite: C. H. Robert, Estimating friction coefficients of mixed globular/chain molecules, such as protein/DNA complexes. Biophys J 69, 840-848 (1995) |
| 52 | + - bib: Robert1995 |
| 53 | + - url: https://doi.org/10.1016/S0006-3495(95)79957-X |
| 54 | + - doi: 10.1016/S0006-3495(95)79957-X |
| 55 | + |
| 56 | +# Don't forget to surround abstract with double quotes |
| 57 | +abstract: "Reproduction report for C. H. Robert, Estimating friction coefficients of mixed globular/chain molecules, such as protein/DNA complexes. The original Mathematica notebook code, with very few modifications, was used with the most recent Mathematica version 12.0 to reproduce the data plotted in the original article." |
| 58 | + |
| 59 | +# Bibliography file (yours) |
| 60 | +bibliography: bibliography.bib |
| 61 | + |
| 62 | +# Type of the article |
| 63 | +# Type can be: |
| 64 | +# * Editorial |
| 65 | +# * Letter |
| 66 | +# * Replication |
| 67 | +type: Reproduction |
| 68 | + |
| 69 | +# Scientific domain of the article (e.g. Computational Neuroscience) |
| 70 | +# (one domain only & try to be not overly specific) |
| 71 | +domain: Biophysics |
| 72 | + |
| 73 | +# Coding language (main one only if several) |
| 74 | +language: Mathematica |
| 75 | + |
| 76 | + |
| 77 | +# To be filled by the author(s) after acceptance |
| 78 | +# ----------------------------------------------------------------------------- |
| 79 | + |
| 80 | +# For example, the URL of the GitHub issue where review actually occured |
| 81 | +review: |
| 82 | + - url: https://github.com/ReScience/submissions/issues/26 |
| 83 | + |
| 84 | +contributors: |
| 85 | + - name: Konrad Hinsen |
| 86 | + orcid: 0000-0003-0330-9428 |
| 87 | + role: editor |
| 88 | + - name: Gerald Kneller |
| 89 | + orcid: 0000-0002-3374-3797 |
| 90 | + role: reviewer |
| 91 | + - name: |
| 92 | + orcid: |
| 93 | + role: reviewer |
| 94 | + |
| 95 | +# This information will be provided by the editor |
| 96 | +dates: |
| 97 | + - received: April 10, 2020 |
| 98 | + - accepted: June 8, 2020 |
| 99 | + - published: June 9, 2020 |
| 100 | + |
| 101 | +# This information will be provided by the editor |
| 102 | +article: |
| 103 | + - number: 4 |
| 104 | + - doi: 0.5281/zenodo.3886412 |
| 105 | + - url: https://zenodo.org/record/3886412/files/article.pdf |
| 106 | + |
| 107 | +# This information will be provided by the editor |
| 108 | +journal: |
| 109 | + - name: "ReScience C" |
| 110 | + - issn: 2430-3658 |
| 111 | + - volume: 6 |
| 112 | + - issue: 1 |
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