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0.5281_zenodo.3886412/article.pdf

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0.5281_zenodo.3886412/article.yaml

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# To be filled by the author(s) at the time of submission
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# -------------------------------------------------------
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# Title of the article:
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# - For a successful replication, it shoudl be prefixed with "[Re]"
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# - For a failed replication, it should be prefixed with "[¬Re]"
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# - For other article types, no instruction (but please, not too long)
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title: "[Rp] Reproducibility report: Estimating friction coefficients
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of mixed globular/chain molecules, such as protein/DNA complexes. [Biophys J 69, 840-848 (1995)]"
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# List of authors with name, orcid number, email and affiliation
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# Affiliation "*" means contact author (required even for single-authored papers)
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authors:
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- name: Charles H. Robert
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orcid: 0000-0003-0337-1504
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email: robert@ibpc.fr
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affiliations: 1,2,*
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# List of affiliations with code (corresponding to author affiliations), name
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# and address. You can also use these affiliations to add text such as "Equal
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# contributions" as name (with no address).
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affiliations:
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- code: 1
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name: CNRS, Université de Paris, Laboratoire de Biochimie Théorique, UPR9080
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address: 13, rue Pierre et Marie Curie, F-75005 Paris, France
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- code: 2
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name: Institut de Biologie Physico-Chimique, Fondation Edmond de Rothschild,
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address: PSL Research University, Paris, France
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# List of keywords (adding the programming language might be a good idea)
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keywords: macromolecular structure, protein-DNA assemblies, chromatin, fiber, nucleosome, translational diffusion coefficient, friction coefficient
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# Code URL and DOI/SWH (url is mandatory for replication, doi after acceptance)
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# You can get a DOI for your code from Zenodo, or an SWH identifier from
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# Software Heritage.
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# see https://guides.github.com/activities/citable-code/
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code:
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- url: https://zenodo.org/record/3878075
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- doi: 10.5281/zenodo.3878075
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- swh:
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# Data URL and DOI (optional if no data)
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data:
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- url:
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- doi:
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# Information about the original article that has been replicated
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replication:
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- cite: C. H. Robert, Estimating friction coefficients of mixed globular/chain molecules, such as protein/DNA complexes. Biophys J 69, 840-848 (1995)
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- bib: Robert1995
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- url: https://doi.org/10.1016/S0006-3495(95)79957-X
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- doi: 10.1016/S0006-3495(95)79957-X
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# Don't forget to surround abstract with double quotes
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abstract: "Reproduction report for C. H. Robert, Estimating friction coefficients of mixed globular/chain molecules, such as protein/DNA complexes. The original Mathematica notebook code, with very few modifications, was used with the most recent Mathematica version 12.0 to reproduce the data plotted in the original article."
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# Bibliography file (yours)
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bibliography: bibliography.bib
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# Type of the article
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# Type can be:
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# * Editorial
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# * Letter
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# * Replication
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type: Reproduction
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# Scientific domain of the article (e.g. Computational Neuroscience)
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# (one domain only & try to be not overly specific)
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domain: Biophysics
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# Coding language (main one only if several)
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language: Mathematica
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# To be filled by the author(s) after acceptance
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# -----------------------------------------------------------------------------
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# For example, the URL of the GitHub issue where review actually occured
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review:
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- url: https://github.com/ReScience/submissions/issues/26
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contributors:
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- name: Konrad Hinsen
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orcid: 0000-0003-0330-9428
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role: editor
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- name: Gerald Kneller
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orcid: 0000-0002-3374-3797
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role: reviewer
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- name:
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orcid:
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role: reviewer
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# This information will be provided by the editor
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dates:
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- received: April 10, 2020
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- accepted: June 8, 2020
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- published: June 9, 2020
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# This information will be provided by the editor
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article:
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- number: 4
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- doi: 0.5281/zenodo.3886412
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- url: https://zenodo.org/record/3886412/files/article.pdf
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# This information will be provided by the editor
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journal:
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- name: "ReScience C"
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- issn: 2430-3658
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- volume: 6
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- issue: 1

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