Skip to content

Update tutorial text #60

@ri-heme

Description

@ri-heme

Changes to tutorial:

  • Indicate that one should do hyperparameter optimization before running analyze latent?
  • How to download tutorial data if not cloning via git (perhaps from link/wget on Zenodo or similar)
  • Indicate where and which output files one should look at. E.g. from Tuning the hyperparameters indicate where the output will be
  • in a how-to-run-on-my-data: Indicate what should be done to run on my own data, e.g. as much help as possible will make it easier for beginners to run it
  • Indicate how long time it took to run the tutorial for you using CPUs, e.g. so users know they dont need GPU to run
  • Add that log-file with more details is written as logs/identify_associations.log (for instance)
  • Indicate that identify_associations_ttest will run 4 models each with different latent size. Each model is run 10 times for a total of 40 models
  • Is it possible to add a small helper script to check the overlap of significant features and the truth data (probably done in notebook)
  • Note that running bayes association overwrites the output of ttest association
  • Front readme: Indicate how to install from git clone

Metadata

Metadata

Assignees

No one assigned

    Labels

    documentationImprovements or additions to documentation

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions