0.12.0

What's Changed

🎉 Exciting New Features

• Use MNIInfant transforms from templateflow by @tsalo in #1487

🐛 Bug Fixes

• Change memory argument destination to memory_gb by @j1c in #1490
• Fix WM and CSF component selection in acompcor and acompcor_gsr by @roeysc in #1498
• Fix brainsprite when --warp-surfaces-native2std is disabled by @tsalo in #1501

Other Changes

• Use fsLR-registered spheres when available by @tsalo in #1486
• Add hash entity to outputs by @tsalo in #1496

New Contributors

• @j1c made their first contribution in #1490
• @roeysc made their first contribution in #1498

Full Changelog: 0.11.1...0.12.0

0.11.1

What's Changed

🐛 Bug Fixes

• Fix figure collection for longitudinal, but not session-wise, reports by @tsalo in #1482

Other Changes

• Drop dir and run entities from single-run tasks by @tsalo in #1472
• Check DatasetType for "derivative" or "derivatives" by @tsalo in #1481

Full Changelog: 0.11.0...0.11.1

0.11.0

What's Changed

🛠 Breaking Changes

• Use mem_mb instead of mem_gb by @smeisler in #1417

🎉 Exciting New Features

• Add --report-output-level parameter by @tsalo in #1436
• Collect and apply transforms between native anatomical spaces by @tsalo in #1437

🐛 Bug Fixes

• Ensure T1w-only processing does not collect T2w by @tsalo in #1433
• Support session-wise anatomical processing by @tsalo in #1438
• Fix session-wise collection by @tsalo in #1439
• Fix session-wise collection of surface files by @tsalo in #1440
• Make workflow name unique for session-wise processing by @tsalo in #1441
• Add nifti brain mask to hcpya ingression by @smeisler in #1411
• Write out filtered motion parameters when dummy-scans is not zero by @tsalo in #1446
• Ingress BOLD brain mask in ABCD-BIDS and HCP processing by @tsalo in #1473

Other Changes

• Update note about HCP compatibility by @tsalo in #1465

Full Changelog: 0.10.7...0.11.0

0.11.0rc1

This release introduces one minor breaking change (--mem-gb has become --mem-mb), but other than that it's mostly a bug-fix release that will now leverage session-wise anatomical data, when available (e.g., for Nibabies derivatives).

What's Changed

🛠 Breaking Changes

• Use mem_mb instead of mem_gb by @smeisler in #1417

🎉 Exciting New Features

• Add --report-output-level parameter by @tsalo in #1436
• Collect and apply transforms between native anatomical spaces by @tsalo in #1437

🐛 Bug Fixes

• Ensure T1w-only processing does not collect T2w by @tsalo in #1433
• Support session-wise anatomical processing by @tsalo in #1438
• Fix session-wise collection by @tsalo in #1439
• Fix session-wise collection of surface files by @tsalo in #1440
• Make workflow name unique for session-wise processing by @tsalo in #1441
• Add nifti brain mask to hcpya ingression by @smeisler in #1411

Full Changelog: 0.10.7...0.11.0rc1

0.10.7

What's Changed

🎉 Exciting New Features

• Use masked functional and anatomical images for executive summary by @tsalo in #1425

🐛 Bug Fixes

• Warp fsLR surfaces to NLin6 for brainsprite by @tsalo in #1419
• Warp anat mask to anat space for coreg QC by @tsalo in #1423
• Remove background label in ConnectPlot by @tsalo in #1424

Other Changes

• Run vertex normalization on output surfaces by @tsalo in #1420

Full Changelog: 0.10.6...0.10.7

0.10.6

What's Changed

🎉 Exciting New Features

• Add session-id parameter by @tsalo in #1379
• Add colorbar to correlation matrix plot by @tsalo in #1401

🐛 Bug Fixes

• Support --abcc-qc with --file-format nifti by @tsalo in #1388
• Do not attempt to concatenate runs when no runs in entity set are processed by @tsalo in #1398
• Make calculations robust to NaNs by @tsalo in #1399
• Fix atlas names in concatenated parcellated output files by @tsalo in #1407

Other Changes

• Only estimate head radius if necessary by @tsalo in #1381
• Simplify the brainsprite workflow setup by @tsalo in #1384
• Parallelize image denoising by @mattcieslak in #1387
• Apply consistency across XCP-D quick-start instructions by @singlesp in #1382
• Test PlotSlicesForBrainSprite by @tsalo in #1393
• Update mode documentation by @B-Sevchik in #1392
• Add comments and debug logging to init_denoise_bold_wf by @tientong98 in #1391
• Add more OMP by @mattcieslak in #1386
• Note that automatic head radius estimation gives higher values than 50 by @tsalo in #1397
• Add file lock to avoid concurrent edits by @tientong98 in #1403
• Clarify mounting in apptainer instructions by @singlesp in #1394

New Contributors

• @singlesp made their first contribution in #1382
• @B-Sevchik made their first contribution in #1392
• @tientong98 made their first contribution in #1391

Full Changelog: 0.10.5...0.10.6

0.10.5

What's Changed

🎉 Exciting New Features

• Use trimesh to generate brainsprite by @tsalo in #1368

🐛 Bug Fixes

• Stop autoescaping the boilerplate by @mattcieslak in #1369

Full Changelog: 0.10.4...0.10.5

0.10.4

What's Changed

🐛 Bug Fixes

• Support multi-step composite transforms from Nibabies by @tsalo in #1365

Full Changelog: 0.10.3...0.10.4

0.10.3

This release fixes a testing bug that prevented 0.10.2 from deploying.

What's Changed

🐛 Bug Fixes

• Allow sub- prefix in participant labels by @tsalo in #1347
• Downgrade connectome workbench version by @tsalo in #1358
• Fix resource class of CIFTI tests by @tsalo in #1362

Other Changes

• Clarify that warped surfaces can be overlaid on the MNI152NLin6Asym template by @tsalo in #1349
• Run ruff by @tsalo in #1357

Full Changelog: 0.10.1...0.10.3

0.10.2

This release failed to deploy due a testing issue, so please skip forward to 0.10.3.

What's Changed

🐛 Bug Fixes

• Downgrade connectome workbench version by @tsalo in #1358
• Allow sub- prefix in participant labels by @tsalo in #1347

Other Changes

• Clarify that warped surfaces can be overlaid on the MNI152NLin6Asym template by @tsalo in #1349
• Run ruff by @tsalo in #1357

Full Changelog: 0.10.1...0.10.2