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Integrate Cell Ranger for reprocessing single-cell datasets based on 10x Chromium #97

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arteymix opened this issue Apr 24, 2025 · 0 comments
Open
4 tasks

Integrate Cell Ranger for reprocessing single-cell datasets based on 10x Chromium #97

arteymix opened this issue Apr 24, 2025 · 0 comments
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  •  detect platforms/datasets that are suitable for Cell Ranger
  • add a task for generating the reference (optional, we can use those provided by Cell Ranger)
  • add a task for running Cell Ranger, we might have to collect outputs in a new directory
  • load single-cell data in Gemma with loadSingleCellData CLI using the --data-path option
@arteymix arteymix self-assigned this Apr 24, 2025
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