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Functional processing
KepKee edited this page May 26, 2020
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Useful reference: Farivar and VanDuffel (2014): Functional MRI of Awake Behaving Macaques Using Standard Equipment, Advanced Brain Neuroimaging Topics in Health and Disease - Methods and Applications, Chapter 6.
| Ready-to-use Pipelines for NHP fMRI processing | Link to the Resources |
|---|---|
| afni_proc.py | https://prime-re.github.io/pipelines_fmri.html#afni_procpy |
| MR Comparative Anatomy Toolbox (MrCat) | https://prime-re.github.io/pipelines_fmri.html#mr-comparative-anatomy-toolbox-mrcat |
| NeuroElf | https://prime-re.github.io/pipelines_fmri.html#neuroelf |
| NHP-BIDS | https://prime-re.github.io/pipelines_fmri.html#nhp-bids |
| NHP-pycortex | https://prime-re.github.io/pipelines_fmri.html#nhp-pycortex |
| Pypreclin | https://prime-re.github.io/pipelines_fmri.html#pypreclin |
A. Why the interest in NHP neuroimaging?
B. What makes NHP MRI challenging?
C. Typical data analysis challenges
D. Structural data processing steps and PRIME-RE tools
E. Functional data processing steps and PRIME-RE tools
F. Diffusion data processing steps and PRIME-RE tools
G. Cross-species comparisons and PRIME-RE tools