Proper bash wget inline installation.

Author: horta

.bumpversion.cfg

@@ -1,4 +1,4 @@
 [bumpversion]
-current_version = 0.7.68
+current_version = 0.7.69
 files = setup.py conda-recipe/meta.yaml
 

README.md

@@ -37,17 +37,17 @@ tool.
 - Ubuntu
 
     ```
-    wget -O - https://raw.githubusercontent.com/PMBio/limix/master/deploy/apt_limix_install | bash
+    bash <(wget -O - https://raw.githubusercontent.com/PMBio/limix/master/deploy/apt_limix_install)
     ```
 
 - Fedora
     ```
-    wget -O - https://raw.githubusercontent.com/PMBio/limix/master/deploy/dnf_limix_install | bash
+    bash <(wget -O - https://raw.githubusercontent.com/PMBio/limix/master/deploy/dnf_limix_install)
     ```
 
 - OpenSUSE
     ```
-    wget -O - https://raw.githubusercontent.com/PMBio/limix/master/deploy/zypper_limix_install | bash
+    bash <(wget -O - https://raw.githubusercontent.com/PMBio/limix/master/deploy/zypper_limix_install)
     ```
 
 ### From source

conda-recipe/meta.yaml

@@ -1,6 +1,6 @@
 package:
     name: limix
-    version: "0.7.68"
+    version: "0.7.69"
 
 source:
     path: ../

deploy/apt_limix_install

@@ -3,11 +3,9 @@
 echo "Installing Limix."
 
 sudo apt-get update
-sudo apt-get install build-essential libc6 gfortran g++ \
+sudo apt-get -y -q install build-essential libc6 gfortran g++ \
      python python-setuptools cython python-numpy python-scipy \
      python-matplotlib pkg-config libfreetype6-dev libpng12-dev \
      python-h5py liblapack-dev python-pip python-pandas swig \
-     python-sklearn-lib -y
-pip install limix
-hash -r
+     python-sklearn-lib
 pip install limix

deploy/test.pypi.apt

@@ -2,5 +2,5 @@
 
 sudo apt-get update -y -q
 sudo apt-get install wget -y -q
-wget -O - https://raw.githubusercontent.com/PMBio/limix/master/deploy/apt_limix_install | bash
+bash <(wget -O - https://raw.githubusercontent.com/PMBio/limix/master/deploy/apt_limix_install)
 python -c "import limix; print(limix.__version__)"

deploy/test.pypi.dnf

@@ -6,5 +6,5 @@ if type "sudo" > /dev/null 2>&1; then
 fi
 eval "${prefix}dnf update -y -q"
 eval "${prefix}dnf install wget -y -q"
-wget -O - https://raw.githubusercontent.com/PMBio/limix/master/deploy/dnf_limix_install | bash
+bash <(wget -O - https://raw.githubusercontent.com/PMBio/limix/master/deploy/dnf_limix_install)
 python -c "import limix; print(limix.__version__)"

deploy/test.pypi.zypper

@@ -2,5 +2,5 @@
 
 zypper -n update
 zypper -n install wget
-wget -O - https://raw.githubusercontent.com/PMBio/limix/master/deploy/zypper_limix_install | bash
+bash <(wget -O - https://raw.githubusercontent.com/PMBio/limix/master/deploy/zypper_limix_install)
 python -c "import limix; print(limix.__version__)"

setup.py

@@ -5,7 +5,7 @@
 import importlib
 
 PKG_NAME = 'limix'
-VERSION  = '0.7.68'
+VERSION  = '0.7.69'
 
 WORKDIR = os.path.abspath(os.path.dirname(__file__))