error running for imputed VCF #270
hereagain-Y
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Could you update to the latest version of the pipeline |
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Hi, when I was trying to my vcf file, I first used plink2 to generate pfiles, when I used command: nextflow run pgscatalog/pgsc_calc -profile singularity --input /home/dyao8/test/chrm20_samplesheet.csv --target_build GRCh37 --pgs_id PGS00001$(echo $ (python -c 'import pgscatalog_utils; print(pgscatalog_utils.version)'))
8 -latest -r v2.0.0-alpha.4, it keeps showing error at the PGSCATALOG_PGSCALC:PGSCALC:MATCH:MATCH_COMBINE (testchr20) stage with MATCH_COMBINE:
pgscatalog_utils:
END_VERSIONS
Command exit status:
1; Any ideas on why there is error?
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