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Update README.md
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README.md

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--moderate_qual the threshold for a quality score to be considered as moderate quality. Default 20 means Q20. (int [=20])
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--low_qual the threshold for a quality score to be considered as low quality. Default 15 means Q15. (int [=15])
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-j, --json the json format report file name (string [=gencore.json])
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-h, --html the html format report file name (string [=gencore.html])
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--debug output some debug information to STDERR.
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--quit_after_contig stop when <quit_after_contig> contigs are processed. Only used for fast debugging. Default 0 means no limitation. (int [=0])
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-?, --help print this message

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