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fasta version of known adapters used in fastp #608

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Eduardo-Auer opened this issue May 7, 2025 · 2 comments
Open

fasta version of known adapters used in fastp #608

Eduardo-Auer opened this issue May 7, 2025 · 2 comments

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@Eduardo-Auer
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Hello, I would like to know if someone has the fasta file of known adapters used in fastp.
I would like to use this file in Falco to screen for fastp adpters' list (I saw in knownadapters.h and the list is more complete than the default list of falco or fastqc).

@ckrushton
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Hello! I cannot guarantee that this file is comprehensive (we exclusively do Illumina sequencing), but here is the adapter file we use when running FASTP: https://drive.google.com/file/d/1YDt-S68lEQx46AdUCByB_AKy9lplzQbq/view?usp=drive_link

@Eduardo-Auer
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Hello! I cannot guarantee that this file is comprehensive (we exclusively do Illumina sequencing), but here is the adapter file we use when running FASTP: https://drive.google.com/file/d/1YDt-S68lEQx46AdUCByB_AKy9lplzQbq/view?usp=drive_link

Thanks for the reply. But this file is not the same of the adapters sequences of "knownadapters.h". Can you share the fasta file of those sequences (if it is possible)?

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