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Combining all the components of the ontology into one file is an operation that requires quite a lot of I/O operations. I think it might be possible do speed it up, if the repository were to be cloned into a tmpfs, which is RAM-backed, and should theoretically handle a large amount of small files better. That being said, the SSDs used for runners in Github actions seem fairly fast, so it would have to be analysed. Also make sure the runner has enough RAM.
Someone asked about it on SO: https://stackoverflow.com/questions/75726151/is-it-possible-to-use-tmpfs-on-a-github-workflow-service