From 812b33036ce5a703b05e33f4e695013fed20416f Mon Sep 17 00:00:00 2001
From: Usman Akinyemi <usmanakinyemi202@gmail.com>
Date: Sun, 2 Mar 2025 11:47:00 +0530
Subject: [PATCH] fix: update upload and download artifact actions to v4

The upload and download artifact actions using v3 were deprecated,
and the website deployment depends on them. Updated both actions
to v4 in the workflow run to ensure proper deployment.
---
 .github/workflows/analysis.yml | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/analysis.yml b/.github/workflows/analysis.yml
index 55f59cf5..7f5c8b4e 100644
--- a/.github/workflows/analysis.yml
+++ b/.github/workflows/analysis.yml
@@ -70,7 +70,7 @@ jobs:
         run: |
           python -m pytest -m slow --selectAlgorithm ${{ matrix.algorithm }} --saveFileName test_output_${{ matrix.algorithm }}_${{ matrix.SNR }}.csv --SNR ${{ matrix.SNR }} --fitCount 300 --saveDurationFileName test_duration_${{ matrix.algorithm }}_${{ matrix.SNR }}.csv
       - name: Upload raw data
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
             name: Working_Data
             retention-days: 1
@@ -83,7 +83,7 @@ jobs:
     needs: build
     steps:
       - name: Download artifacts
-        uses: actions/download-artifact@v3
+        uses: actions/download-artifact@v4
         with:
           path: artifacts
       - name: Merge fitting results
@@ -95,7 +95,7 @@ jobs:
           head -n 1 $(ls artifacts/Working_Data/test_duration_*.csv | head -n 1) > test_duration.csv
           tail -q -n +2 artifacts/Working_Data/test_duration_*.csv >> test_duration.csv
       - name: Upload merged artifacts
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: Data
           path: |
@@ -121,13 +121,13 @@ jobs:
             any::data.table
             any::ggplot2
       - name: Download artifacts
-        uses: actions/download-artifact@v3
+        uses: actions/download-artifact@v4
         with:
           name: Data
       - name: Generate figures
         run: Rscript --vanilla tests/IVIMmodels/unit_tests/analyze.r test_output.csv test_duration.csv
       - name: Upload figures
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         if: always()
         with:
             name: Figures
@@ -158,13 +158,13 @@ jobs:
             any::tidyverse
             any::assertr
       - name: Download artifacts
-        uses: actions/download-artifact@v3
+        uses: actions/download-artifact@v4
         with:
           name: Data
       - name: Test against previous results
         run: Rscript --vanilla tests/IVIMmodels/unit_tests/compare.r test_output.csv test_reference.csv tests/IVIMmodels/unit_tests/reference_output.csv test_results.csv
       - name: Upload data
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         if: always()
         with:
             name: Comparison