Merge branch 'dicom2niix' of https://github.com/jph6366/TF2.4_IVIM-MRI_CodeCollection into dicom2niix

jph6366 · jph6366 · commit e331dfcbf261 · 2025-04-21T13:03:16.000-04:00
diff --git a/Docker/README.md b/Docker/README.md
@@ -77,6 +77,7 @@ Before running the Docker container, here are the available options for the `Doc
 
 [Note that NIfTI and DICOM encode space differently](https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage#Spatial_Coordinates)
 
+![image](https://github.com/user-attachments/assets/8ea21692-36ac-4773-aec7-6cb3a6838055)
 
 ##### The goal of dcm2niix is to create FSL format bvec/bval files for processing. A crucial concern is ensuring that the gradient directions are reported in the frame of reference expected by the software you use to fit your tractography. [dicom2niix should generate a ".bvec" file that reports the tensors as expected](https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage#Diffusion_Tensor_Imaging) by FSL's dtifit, where vectors are reported relative to image frame of reference (rather than relative to the scanner bore). 
 

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@@ -77,6 +77,7 @@ Before running the Docker container, here are the available options for the `Doc
`77`	`77`
`78`	`78`	`[Note that NIfTI and DICOM encode space differently](https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage#Spatial_Coordinates)`
`79`	`79`
	`80`	`+![image](https://github.com/user-attachments/assets/8ea21692-36ac-4773-aec7-6cb3a6838055)`
`80`	`81`
`81`	`82`	##### The goal of dcm2niix is to create FSL format bvec/bval files for processing. A crucial concern is ensuring that the gradient directions are reported in the frame of reference expected by the software you use to fit your tractography. [dicom2niix should generate a ".bvec" file that reports the tensors as expected](https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage#Diffusion_Tensor_Imaging) by FSL's dtifit, where vectors are reported relative to image frame of reference (rather than relative to the scanner bore).
`82`	`83`