Merge pull request #82 from OSIPI/analysis/fix-analysis

Fix analysis pipeline

Author: oliverchampion

tests/IVIMmodels/unit_tests/compare.r

@@ -3,6 +3,12 @@
 #Run like this:
 #Rscript --vanilla tests/IVIMmodels/unit_tests/compare.r test_output.csv test_reference.csv reference_output.csv test_results.csv
 
+# If this script fails:
+# 1. Save the "Comparison" file from the run on Github, OR run this file directly
+# 2. Find the file producted "test_reference.csv" on Github, or whatever the "reference_file" variable was called
+# 3. This replaces "tests/IVIMmodels/unit_tests/reference_output.csv" in the repository
+# 4. For the algorithm "IAR_LU_modified_mix", replace the "f_f_alpha, Dp_f_alpha, D_f_alpha, f_t_alpha, Dp_t_alpha, D_t_alpha" columns with "0.01,0.01,0.01,0.0,0.0,0.0"
+
 args = commandArgs(trailingOnly=TRUE)
 # Define file paths
 test_file <- "test_output.csv"