Added more requirements and trying no continue on error and file fixes

etpeterson · etpeterson · commit a58f53159b6a · 2023-05-25T21:50:57.000-07:00
diff --git a/.github/workflows/unit_test.yml b/.github/workflows/unit_test.yml
@@ -6,7 +6,7 @@ jobs:
   build:
 
     runs-on: ${{ matrix.os }}
-    continue-on-error: true
+    continue-on-error: false
     strategy:
       fail-fast: false
       matrix:
diff --git a/requirements.txt b/requirements.txt
@@ -4,4 +4,5 @@ torchio
 torch
 logging
 joblib
-dipy
+dipy
+matplotlib
diff --git a/src/original/OGC_AmsterdamUMC/LSQ_fitting.py b/src/original/OGC_AmsterdamUMC/LSQ_fitting.py
@@ -705,7 +705,7 @@ def goodness_of_fit(bvalues, Dt, Fp, Dp, S0, dw_data, Fp2=None, Dp2=None):
         # plt.show()
         # print(R2[vox])
     return R2, adjust
-ed_R2
+# ed_R2
 
 def MSE(bvalues, Dt, Fp, Dp, S0, dw_data):
     """
diff --git a/utils/data_simulation/ivim_simulation.py b/utils/data_simulation/ivim_simulation.py
@@ -1,7 +1,7 @@
 import torch
 import numpy as np
 
-from utils.ivim.ivim_fit import ivim_parameters_to_signal
+from utils.ivim.forward_model import ivim_parameters_to_signal
 
 
 def simulate_ivim_signal(D, Dp, f, S0, bvalues, SNR_array, rg):

-Original file line number
+Diff line change
 torch
 logging
 joblib
 -dipy
 +dipy
 +matplotlib