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Rename Dpim to Dp in file
1 parent be4fb39 commit 9e75a4a

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2 files changed

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-39
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‎phantoms/MR_XCAT_qMRI/sim_ivim_sig.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -385,7 +385,7 @@ def XCAT_to_MR_DCE(XCAT, TR, TE, bvalue, D, f, Ds, b0=3, ivim_cont = True):
385385
generic_data[name] = {
386386
'D': np.mean(Dim[selector], axis=0),
387387
'f': np.mean(fim[selector], axis=0),
388-
'Dpim': np.mean(Dpim[selector], axis=0),
388+
'Dp': np.mean(Dpim[selector], axis=0),
389389
'data': signals
390390
}
391391
generic_data['config'] = {

‎tests/IVIMmodels/unit_tests/generic.json

Lines changed: 38 additions & 38 deletions
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@
22
"Myocardium LV": {
33
"D": 0.0024,
44
"f": 0.14999999999999997,
5-
"Dpim": 0.08,
5+
"Dp": 0.08,
66
"data": [
77
0.34898972165246894,
88
0.34101242160675377,
@@ -27,7 +27,7 @@
2727
"myocardium RV": {
2828
"D": 0.0024,
2929
"f": 0.14999999999999997,
30-
"Dpim": 0.07999999999999999,
30+
"Dp": 0.07999999999999999,
3131
"data": [
3232
0.24871440181457757,
3333
0.23850273859717308,
@@ -52,7 +52,7 @@
5252
"myocardium ra": {
5353
"D": 0.0015,
5454
"f": 0.07000000000000002,
55-
"Dpim": 0.07000000000000002,
55+
"Dp": 0.07000000000000002,
5656
"data": [
5757
0.3701390037402836,
5858
0.3547247709293157,
@@ -77,7 +77,7 @@
7777
"Blood RV": {
7878
"D": 0.0030000000000000005,
7979
"f": 1.0,
80-
"Dpim": 0.1,
80+
"Dp": 0.1,
8181
"data": [
8282
0.17106052259021262,
8383
0.16582622007452907,
@@ -102,7 +102,7 @@
102102
"Blood RA": {
103103
"D": 0.0029999999999999996,
104104
"f": 1.0,
105-
"Dpim": 0.09999999999999998,
105+
"Dp": 0.09999999999999998,
106106
"data": [
107107
0.3703033790249206,
108108
0.3624481744017803,
@@ -127,7 +127,7 @@
127127
"body": {
128128
"D": 0.0016236203565420872,
129129
"f": 0.4753571532049581,
130-
"Dpim": 0.07819939418114051,
130+
"Dp": 0.07819939418114051,
131131
"data": [
132132
0.14414367264868502,
133133
0.14254894780713223,
@@ -152,7 +152,7 @@
152152
"muscle": {
153153
"D": 0.0022959754525911096,
154154
"f": 0.07800932022121823,
155-
"Dpim": 0.020599452033620267,
155+
"Dp": 0.020599452033620267,
156156
"data": [
157157
0.08757654862963136,
158158
0.08674376658664566,
@@ -177,7 +177,7 @@
177177
"Liver": {
178178
"D": 0.0015,
179179
"f": 0.11000000000000007,
180-
"Dpim": 0.1,
180+
"Dp": 0.1,
181181
"data": [
182182
0.20764655512452465,
183183
0.20304949087263294,
@@ -202,7 +202,7 @@
202202
"gall bladder": {
203203
"D": 0.002997327922401265,
204204
"f": 0.10616955533913808,
205-
"Dpim": 0.023182496720710072,
205+
"Dp": 0.023182496720710072,
206206
"data": [
207207
0.3493065062338589,
208208
0.3459177539619973,
@@ -227,7 +227,7 @@
227227
"Right Lung": {
228228
"D": 0.0010502135295603014,
229229
"f": 0.15212112147976886,
230-
"Dpim": 0.057475643163223775,
230+
"Dp": 0.057475643163223775,
231231
"data": [
232232
0.236116775520707,
233233
0.22538994140048546,
@@ -252,7 +252,7 @@
252252
"Left Lung": {
253253
"D": 0.001795835055926347,
254254
"f": 0.14561457009902096,
255-
"Dpim": 0.06618528947223794,
255+
"Dp": 0.06618528947223794,
256256
"data": [
257257
0.20219391502392353,
258258
0.20040984981695986,
@@ -277,7 +277,7 @@
277277
"esophagus": {
278278
"D": 0.00167,
279279
"f": 0.31999999999999995,
280-
"Dpim": 0.030000000000000002,
280+
"Dp": 0.030000000000000002,
281281
"data": [
282282
0.47740725510389664,
283283
0.45186638152227837,
@@ -302,7 +302,7 @@
302302
"esophagus cont": {
303303
"D": 0.00167,
304304
"f": 0.31999999999999995,
305-
"Dpim": 0.030000000000000002,
305+
"Dp": 0.030000000000000002,
306306
"data": [
307307
0.4908291180811218,
308308
0.46298734193501884,
@@ -327,7 +327,7 @@
327327
"st wall": {
328328
"D": 0.0015,
329329
"f": 0.29999999999999993,
330-
"Dpim": 0.012,
330+
"Dp": 0.012,
331331
"data": [
332332
0.33972021704324323,
333333
0.33489876248808564,
@@ -352,7 +352,7 @@
352352
"Stomach Contents": {
353353
"D": 0.0018682099526511075,
354354
"f": 0.39258798069650686,
355-
"Dpim": 0.024967378215835983,
355+
"Dp": 0.024967378215835983,
356356
"data": [
357357
0.3560052458252937,
358358
0.34991932799935316,
@@ -377,7 +377,7 @@
377377
"pancreas": {
378378
"D": 0.0012999999999999997,
379379
"f": 0.14999999999999997,
380-
"Dpim": 0.01,
380+
"Dp": 0.01,
381381
"data": [
382382
0.2607580651974088,
383383
0.2531536308045649,
@@ -402,7 +402,7 @@
402402
"Right kydney cortex": {
403403
"D": 0.00212,
404404
"f": 0.09699999999999998,
405-
"Dpim": 0.02,
405+
"Dp": 0.02,
406406
"data": [
407407
0.15963378893525246,
408408
0.15592535517239714,
@@ -427,7 +427,7 @@
427427
"right kidney medulla": {
428428
"D": 0.0020900000000000003,
429429
"f": 0.158,
430-
"Dpim": 0.018999999999999993,
430+
"Dp": 0.018999999999999993,
431431
"data": [
432432
0.15514794064191945,
433433
0.15102045477128537,
@@ -452,7 +452,7 @@
452452
"Left kidney cortex": {
453453
"D": 0.00212,
454454
"f": 0.09699999999999999,
455-
"Dpim": 0.019999999999999997,
455+
"Dp": 0.019999999999999997,
456456
"data": [
457457
0.2865960334102167,
458458
0.28242548008727403,
@@ -477,7 +477,7 @@
477477
"left kidney medulla": {
478478
"D": 0.0020900000000000003,
479479
"f": 0.158,
480-
"Dpim": 0.018999999999999996,
480+
"Dp": 0.018999999999999996,
481481
"data": [
482482
0.28071870508429503,
483483
0.27599110495416473,
@@ -502,7 +502,7 @@
502502
"adrenal": {
503503
"D": 0.0020427033152408346,
504504
"f": 0.29620728443102123,
505-
"Dpim": 0.009645041271999775,
505+
"Dp": 0.009645041271999775,
506506
"data": [
507507
0.2826787411763678,
508508
0.27831009499717363,
@@ -527,7 +527,7 @@
527527
"Right Renal Pelvis": {
528528
"D": 0.0023226345557043155,
529529
"f": 0.08526206184364574,
530-
"Dpim": 0.011505159298527953,
530+
"Dp": 0.011505159298527953,
531531
"data": [
532532
0.23845594027974554,
533533
0.2340885887968851,
@@ -552,7 +552,7 @@
552552
"Left Renal Pelvis": {
553553
"D": 0.0033466566117599994,
554554
"f": 0.4828160165372796,
555-
"Dpim": 0.08583973481164611,
555+
"Dp": 0.08583973481164611,
556556
"data": [
557557
0.29934044796894144,
558558
0.2932737029677877,
@@ -577,7 +577,7 @@
577577
"spleen": {
578578
"D": 0.0012999999999999997,
579579
"f": 0.19999999999999998,
580-
"Dpim": 0.03000000000000001,
580+
"Dp": 0.03000000000000001,
581581
"data": [
582582
0.20825262009604234,
583583
0.20694704899515484,
@@ -602,7 +602,7 @@
602602
"Ribs": {
603603
"D": 0.0014138413075201123,
604604
"f": 0.048836057003191935,
605-
"Dpim": 0.07342330265121569,
605+
"Dp": 0.07342330265121569,
606606
"data": [
607607
0.12711214146958372,
608608
0.1263954809552108,
@@ -627,7 +627,7 @@
627627
"Cortical Bone": {
628628
"D": 0.0018204574812188043,
629629
"f": 0.06101911742238941,
630-
"Dpim": 0.05451769101112701,
630+
"Dp": 0.05451769101112701,
631631
"data": [
632632
0.009390143914629926,
633633
0.009099037389799763,
@@ -652,7 +652,7 @@
652652
"Spine": {
653653
"D": 0.0006031655633456552,
654654
"f": 0.45466020103939103,
655-
"Dpim": 0.030877998160001693,
655+
"Dp": 0.030877998160001693,
656656
"data": [
657657
0.2074391650883512,
658658
0.20328222351873226,
@@ -677,7 +677,7 @@
677677
"spinal cord": {
678678
"D": 0.0024875668530619454,
679679
"f": 0.1558555380447055,
680-
"Dpim": 0.05700680211778108,
680+
"Dp": 0.05700680211778108,
681681
"data": [
682682
0.14968537510540572,
683683
0.1474358467818982,
@@ -702,7 +702,7 @@
702702
"Bone Marrow": {
703703
"D": 0.002140130838029838,
704704
"f": 0.09242722776276355,
705-
"Dpim": 0.10195846277645583,
705+
"Dp": 0.10195846277645583,
706706
"data": [
707707
0.1137767818468923,
708708
0.11195565594192901,
@@ -727,7 +727,7 @@
727727
"Artery": {
728728
"D": 0.0029999999999999988,
729729
"f": 1.0,
730-
"Dpim": 0.09999999999999998,
730+
"Dp": 0.09999999999999998,
731731
"data": [
732732
0.22834647271477249,
733733
0.2231054294831425,
@@ -752,7 +752,7 @@
752752
"Vein": {
753753
"D": 0.002999999999999999,
754754
"f": 1.0,
755-
"Dpim": 0.09999999999999999,
755+
"Dp": 0.09999999999999999,
756756
"data": [
757757
0.22441397394228915,
758758
0.22020896097441717,
@@ -777,7 +777,7 @@
777777
"asc lower intestine": {
778778
"D": 0.00131,
779779
"f": 0.6899999999999998,
780-
"Dpim": 0.028999999999999998,
780+
"Dp": 0.028999999999999998,
781781
"data": [
782782
0.2954735243830286,
783783
0.2906352588520771,
@@ -802,7 +802,7 @@
802802
"trans lower intestine": {
803803
"D": 0.0013099999999999997,
804804
"f": 0.6899999999999997,
805-
"Dpim": 0.029000000000000012,
805+
"Dp": 0.029000000000000012,
806806
"data": [
807807
0.3059958856171849,
808808
0.3033478430012246,
@@ -827,7 +827,7 @@
827827
"desc lower intestine": {
828828
"D": 0.00131,
829829
"f": 0.6899999999999997,
830-
"Dpim": 0.029000000000000015,
830+
"Dp": 0.029000000000000015,
831831
"data": [
832832
0.3321131178872771,
833833
0.32853831493658764,
@@ -852,7 +852,7 @@
852852
"small intestine": {
853853
"D": 0.00131,
854854
"f": 0.6899999999999998,
855-
"Dpim": 0.02900000000000001,
855+
"Dp": 0.02900000000000001,
856856
"data": [
857857
0.30074425040279856,
858858
0.2944845452430382,
@@ -877,7 +877,7 @@
877877
"pericardium": {
878878
"D": 0.0030000000000000005,
879879
"f": 0.07000000000000002,
880-
"Dpim": 0.009999999999999998,
880+
"Dp": 0.009999999999999998,
881881
"data": [
882882
0.32000494407805,
883883
0.3088654009375722,
@@ -902,7 +902,7 @@
902902
"Cartilage": {
903903
"D": 0.0026870215041229625,
904904
"f": 0.38563517334297287,
905-
"Dpim": 0.012404465173409039,
905+
"Dp": 0.012404465173409039,
906906
"data": [
907907
0.22023434588419283,
908908
0.21765363810860222,
@@ -927,7 +927,7 @@
927927
"Fat": {
928928
"D": 0.0015908888071378827,
929929
"f": 0.4858910413604801,
930-
"Dpim": 0.10124472949421114,
930+
"Dp": 0.10124472949421114,
931931
"data": [
932932
0.04347759306594482,
933933
0.04331055503018695,

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