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While working on #52 - I got this report. Apparently something like 82% of bold records are being marked as invalid.
- input_records: 585125
invalid_records: 479287
invalid_taxons: 494
invalid_occurences: 0
output_files: 105344
name: add_bold_records
time: '2022-02-23T16:59:10-05:00'
They're getting filtered here.
phylogatr-web/lib/tasks/pipeline.rake
Lines 317 to 321 in 2dcfb1d
# TODO: every skipped record should be written to a file | |
unless record.gene_symbol_mapped.present? && record.sequence.present? && record.species.present? && record.species_binomial? | |
invalid_records += 1 | |
next | |
end |