Error in plot when infinite value warning in model

[sssimonyang]

The package version is 0.6.2.
When I was plotting

> model = coxph(Surv(os, status) ~ group, total)
Warning message:
In coxph.fit(X, Y, istrat, offset, init, control, weights = weights,  :
  Loglik converged before variable  1,2 ; coefficient may be infinite. 
> print(forest_model(model))
Error in grDevices::axisTicks(log10(exp(forest_min_max)), TRUE) : 
  log - axis(), 'at' creation, _LARGE_ range: invalid {xy}axp or par; nint=5
	 axp[0:1]=(1e-307,1e+308), usr[0:1]=(0,inf); i=615, ni=123

It will run into error in plot when coefficient may be infinite warning is showed.
The result of model seems normal, only some value is too big.

> model
Call:
coxph(formula = Surv(os, status) ~ group, data = total)

              coef exp(coef)  se(coef)     z     p
groupIHR 1.943e+01 2.746e+08 2.993e+03 0.006 0.995
groupEHM 2.032e+01 6.712e+08 2.993e+03 0.007 0.995

Likelihood ratio test=96.25  on 2 df, p=< 2.2e-16
n= 224, number of events= 89 

I think it is acceptable to see inf value when the value is too big.

[gernophil]

Any updates on this?

[AbubakerSuliman]

In my case, change the variable limits in forest_model to forest_model(..., limits = c(-1,1)) solves the issue

[bauer29]

AbubakerSuliman, where did you added the command limits = c(-1,1) .
Here is the error in my code:

forest_model(coxph(Surv(Dias_sobrevida_enxerto, Enxerto_funcionante_1ano) ~ Germe_gravidade_tto + DM_sim_nao + Sexo_receptor + DGF , data = LPO), panels)
Warning in coxph.fit(X, Y, istrat, offset, init, control, weights = weights, :
Loglik converged before variable 2,3,5,6 ; coefficient may be infinite.
Error in eval_tidy(panels[[i]]$display, fd_for_eval) :
object 'n_events' not found

[AbubakerSuliman]

@bauer29 inside forest_model see ?forest_model for more details.
However, from the error message, you have a different issue. I would suggest posting a question in StackOverflow with reproducible data; share the link and I can have a look at it

[bauer29]

https://stackoverflow.com/q/77876346/22859129