Update code coverage version

Author: mayer79

.github/workflows/test-coverage.yaml

@@ -4,9 +4,10 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
 
-name: test-coverage
+name: test-coverage.yaml
+
+permissions: read-all
 
 jobs:
   test-coverage:
@@ -15,41 +16,52 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
-            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package"),
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package"),
             function_exclusions = c(
               "kernelshap\\.ranger",
               "permshap\\.ranger",
               "pred_ranger"
             )
           )
+          print(cov)
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v5
+        with:
+          # Fail if error if not on PR, or if on PR and token is given
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
+          files: ./cobertura.xml
+          plugins: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
       - name: Show testthat output
         if: always()
         run: |
           ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
         shell: bash
 
       - name: Upload test results
         if: failure()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: coverage-test-failures
           path: ${{ runner.temp }}/package

NEWS.md

@@ -5,6 +5,10 @@
 - More compact README.
 - Updated function description.
 
+## Maintenance
+
+- Update code coverage version [#150](https://github.com/ModelOriented/kernelshap/pull/150).
+
 # kernelshap 0.7.0
 
 This release is intended to be the last before stable version 1.0.0.

README.md

@@ -3,7 +3,7 @@
 <!-- badges: start -->
 
 [![R-CMD-check](https://github.com/ModelOriented/kernelshap/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ModelOriented/kernelshap/actions/workflows/R-CMD-check.yaml)
-[![Codecov test coverage](https://codecov.io/gh/ModelOriented/kernelshap/graph/badge.svg)](https://app.codecov.io/gh/ModelOriented/kernelshap?branch=main)
+[![Codecov test coverage](https://codecov.io/gh/ModelOriented/kernelshap/graph/badge.svg)](https://app.codecov.io/gh/ModelOriented/kernelshap)
 [![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/kernelshap)](https://cran.r-project.org/package=kernelshap)
 
 [![](https://cranlogs.r-pkg.org/badges/kernelshap)](https://cran.r-project.org/package=kernelshap)