FIX: bug in read_data_sensor when one or more IGRA names are nan

Author: wolfidan

src/pyart

@@ -1080,6 +1080,8 @@ def _create_cfg_dict(cfgfile):
     try:
         print("- Main config file : {}".format(cfgfile))
         cfg = read_config(cfg["configFile"], cfg=cfg, defaults=DEFAULT_CONFIG["main"])
+        if not cfg["configpath"]:
+            cfg["configpath"] = os.path.dirname(cfgfile)
         # Convert loc and prod config files to absolute paths if needed
         filenames = [
             "locationConfigFile",

src/pyrad_proc/pyrad/flow/flow_aux.py

@@ -84,6 +84,7 @@
     "iconpath": None,
     "psrpath": None,
     "iqpath": None,
+    "configpath": None,
     "colocgatespath": None,
     "excessgatespath": None,
     "dempath": None,

src/pyrad_proc/pyrad/io/default_config.py

@@ -2639,7 +2639,9 @@ def read_radiosounding_igra(station, dtime):
         return
 
     # get igra code
-    code = stations_ref["CODE"][stations_ref["CODE"].str.contains(station)].iloc[0]
+    code = stations_ref["CODE"][
+        stations_ref["CODE"].str.contains(station, na=False)
+    ].iloc[0]
 
     # Check if specified time is after 2021
     if dtime > datetime.datetime(2021, 1, 1):

src/pyrad_proc/pyrad/io/read_data_sensor.py

@@ -124,7 +124,7 @@ def main():
     proc_endtime = None
     if args.endtime is not None:
         proc_endtime = datetime.datetime.strptime(args.endtime, "%Y%m%d%H%M%S")
-    cfgfile_proc = args.cfgpath + args.proc_cfgfile
+    cfgfile_proc = os.path.join(args.cfgpath, args.proc_cfgfile)
 
     if args.infostr == "None":
         infostr = ""

src/pyrad_proc/scripts/main_process_cosmo.py

@@ -115,7 +115,7 @@ def main():
     cfgfile_list = []
     for ind, cfgfile in enumerate(args.cfgfiles):
         print("config file " + str(ind) + ": " + cfgfile)
-        cfgfile_list.append(args.cfgpath + cfgfile)
+        cfgfile_list.append(os.path.join(args.cfgpath, cfgfile))
     if args.starttime is not None:
         print("start time: " + args.starttime)
     else:

src/pyrad_proc/scripts/main_process_cosmo_rt.py

@@ -172,7 +172,7 @@ def main():
     proc_endtime = None
     if args.endtime is not None:
         proc_endtime = datetime.datetime.strptime(args.endtime, "%Y%m%d%H%M%S")
-    cfgfile_proc = args.cfgpath + args.proc_cfgfile
+    cfgfile_proc = os.path.join(args.cfgpath, args.proc_cfgfile)
 
     if args.infostr == "None":
         infostr = ""

src/pyrad_proc/scripts/main_process_data.py

@@ -93,7 +93,7 @@ def main():
 
     proc_starttime = datetime.datetime.strptime(args.starttime, "%Y%m%d%H%M%S")
     proc_endtime = datetime.datetime.strptime(args.endtime, "%Y%m%d%H%M%S")
-    cfgfile_proc = args.cfgpath + args.proc_cfgfile
+    cfgfile_proc = os.path.join(args.cfgpath, args.proc_cfgfile)
 
     pyrad_main(cfgfile_proc, starttime=proc_starttime, endtime=proc_endtime)
 

src/pyrad_proc/scripts/main_process_data_birds.py

@@ -159,7 +159,7 @@ def main():
         seconds=float(args.endtime[4:6]),
     )
 
-    cfgfile_proc = args.cfgpath + args.proc_cfgfile
+    cfgfile_proc = os.path.join(args.cfgpath, args.proc_cfgfile)
     if args.postproc_cfgfile is not None:
         cfgfile_postproc = args.cfgpath + args.postproc_cfgfile
 

src/pyrad_proc/scripts/main_process_data_period.py

@@ -122,7 +122,7 @@ def main():
     cfgfile_list = []
     for ind, cfgfile in enumerate(args.cfgfiles):
         print("config file " + str(ind) + ": " + cfgfile)
-        cfgfile_list.append(args.cfgpath + cfgfile)
+        cfgfile_list.append(os.path.join(args.cfgpath, cfgfile))
     if args.starttime is not None:
         print("start time: " + args.starttime)
     else: