Skip to content

Commit 9baa935

Browse files
authored
Merge pull request #14 from MachineLearningLifeScience/feature-updating-to-new-interface
Updates the documentation to new poli interface
2 parents 2793778 + 5f92fc8 commit 9baa935

File tree

98 files changed

+2810
-1130
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

98 files changed

+2810
-1130
lines changed

docs/poli-docs/_autosummary/poli.tests.docs_examples.test_objective_functions.rst

Lines changed: 5 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -16,8 +16,13 @@
1616
test_aloha_example
1717
test_dockstring_example
1818
test_drd3_docking_example
19+
test_foldx_sasa
20+
test_foldx_stability
1921
test_logp_example
22+
test_penalized_logp_lambo
2023
test_qed_example
24+
test_rasp_example
25+
test_sa_tdc_example
2126
test_toy_continuous_example
2227
test_white_noise_example
2328

docs/poli-docs/_autosummary/poli.tests.registry.chemistry.test_chemistry_objectives.rst

Lines changed: 0 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -16,13 +16,9 @@
1616
test_force_registering_logp
1717
test_force_registering_qed
1818
test_force_registering_qed_with_context_manager
19-
test_logp_is_available
2019
test_penalized_logp_lambo
21-
test_qed_is_available
2220
test_querying_dockstring_using_selfies
2321
test_querying_dockstring_using_smiles
24-
test_registering_logp
25-
test_registering_qed
2622

2723

2824

docs/poli-docs/_autosummary/poli.tests.registry.rst

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,4 @@
1-
poli.tests.registry
1+
poli.tests.registry
22
===================
33

44
.. automodule:: poli.tests.registry
@@ -34,6 +34,7 @@ poli.tests.registry
3434
poli.tests.registry.test_black_box_instancing
3535
poli.tests.registry.test_force_isolation
3636
poli.tests.registry.test_instancing_black_boxes_alone
37+
poli.tests.registry.test_multi_objective_and_negative
3738
poli.tests.registry.test_passing_array_of_strings
3839
poli.tests.registry.toy_continuous_problems
3940

Lines changed: 29 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,29 @@
1+
poli.tests.registry.test\_black\_box\_instancing
2+
================================================
3+
4+
.. automodule:: poli.tests.registry.test_black_box_instancing
5+
6+
7+
8+
9+
10+
11+
12+
.. rubric:: Functions
13+
14+
.. autosummary::
15+
16+
test_instancing_a_black_box_both_ways_matches
17+
18+
19+
20+
21+
22+
23+
24+
25+
26+
27+
28+
29+
Lines changed: 30 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,30 @@
1+
poli.tests.registry.test\_multi\_objective\_and\_negative
2+
=========================================================
3+
4+
.. automodule:: poli.tests.registry.test_multi_objective_and_negative
5+
6+
7+
8+
9+
10+
11+
12+
.. rubric:: Functions
13+
14+
.. autosummary::
15+
16+
test_multi_objective_instantiation
17+
test_negative_black_boxes
18+
19+
20+
21+
22+
23+
24+
25+
26+
27+
28+
29+
30+

docs/poli-docs/_autosummary/poli.tests.registry.test_passing_array_of_strings.rst

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,4 @@
1-
poli.tests.registry.test\_passing\_array\_of\_strings
1+
poli.tests.registry.test\_passing\_array\_of\_strings
22
=====================================================
33

44
.. automodule:: poli.tests.registry.test_passing_array_of_strings
Lines changed: 31 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,31 @@
1+
poli.tests.test\_core\_promises
2+
===============================
3+
4+
.. automodule:: poli.tests.test_core_promises
5+
6+
7+
8+
9+
10+
11+
12+
.. rubric:: Functions
13+
14+
.. autosummary::
15+
16+
test_creating_a_problem
17+
test_creating_an_instance_of_a_black_box
18+
test_instancing_a_black_box_that_requires_isolation
19+
20+
21+
22+
23+
24+
25+
26+
27+
28+
29+
30+
31+

0 commit comments

Comments
 (0)