MIMIC-IV 1.0 C. diff. test encoding #1169
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tchang1997
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MIMIC-IV
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I am currently trying to extract information about whether a patient was tested for C. diff. within an admission, as well as the test result(s). However, I ran into some issues, and I want to make sure that my encoding procedure is correct.
hosp/labevents.csv
andhosp/microbiologyevents.csv
. Thehosp/microbiologyevents.csv
table has much more results; the patients/admission IDs in the two tables don't necessarily overlap. Are both tables supposed to be aggregated as a source of test results?subject_id
andhadm_id
) that do not concord. I'm even seeing a few cases of the same reportedtest_id
yielding different results for the samesubject_id
,hadm_id
pair (I'd show examples, but I don't know that showing specific IDs is allowed). I've seen "rules" for handling these (i.e. using PCR/DNA amplification as a "tiebreaker" test when C. diff. toxin and antigen tests contradict), but is there a "rule" for MIMIC to handle cases with multiple tests?Thanks so much in advance!
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