Doubt Regarding Project 7

[nilay-v3rma]

Hi,
The project description mentions "Depending on the size of the project, additional visualizations could be added, such as: a "heatmap" of ligand atoms involved in different interactions by highlighting such atoms with a bivariate Gaussian distribution based on an atomic interaction-aware weighting (see doi.org/10.1186/1758-2946-5-43 for reference). Another one could be to generate a figure similar to the LigNetwork with InteractionDrawer, converting the ProLIF metadata to follow their JSON schema. For protein-protein systems and residue network analysis, Flareplot would be very beneficial."

I wanted to confirm If I should Include a detailed plan about these (all or at least some of them) as well in my proposal? I plan to focus first on achieving the core objective of automated, non-overlapping residue placement.

Looking forward to any advice!

[cbouy]

Hi @nilay-v3rma,

You can include any of these extra projects if you think there's a chance you'll have time to tackle them for the project size you choose. Overall I think it's reasonable to expect at least one extra if you go for a medium size. But you're right in thinking that the automated optimal residue placement comes first, those other "side-quests" are optional.

[nilay-v3rma]

Thank you for the feedback! I will revise and update my proposal to include atleast one of the additional tasks.

[nilay-v3rma]

Hello @cbouy ,
Thank you for your feedback on the proposal draft for Project 7. I’ve addressed your comments and updated the proposal, including a new task for the heatmap visualization. Would it be possible for you to provide any additional feedback before the deadline? I understand the timeline is tight, so if that’s not feasible, I will proceed with submitting the updated proposal! Thank you again for your time and support!