Installation Error #41
Description
Hi,
I tried installing HOME and I ran into an error.
I cloned the directory as mentioned, created the environment with Python 2.7.
[juaguila@u05 ~]$ module load miniconda3-23.5.2
[juaguila@u05 ~]$ conda create -n HOME python=2.7
[juaguila@u05 ~]$ cd appz/
[juaguila@u05 appz]$ git clone https://github.com/ListerLab/HOME.git
[juaguila@u05 appz]$ cd ./HOME/
I tried runnin the installation and I got an error:
[juaguila@u05 ~]$ source activate HOME
(HOME) [juaguila@u05 HOME]$ python setup.py install
Processing statsmodels-0.6.1.zip
Writing /tmp/easy_install-rB20mf/statsmodels-0.6.1/setup.cfg
Running statsmodels-0.6.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-rB20mf/statsmodels-0.6.1/egg-dist-tmp-BFMJd_
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
package init file 'statsmodels/tsa/vector_ar/data/init.py' not found (or not a regular file)
warning: no files found matching '.pxi' anywhere in distribution
warning: no previously-included files matching '' found under directory 'build'
warning: no previously-included files matching '' found under directory 'dist'
warning: no previously-included files found matching 'docs/source/generated/'
warning: no previously-included files matching '' found under directory 'docs/build'
warning: no previously-included files matching '' found under directory 'docs/build/htmlhelp'
warning: no files found matching 'statsmodels/statsmodelsdoc.chm'
no previously-included directories found matching '/pycache'
warning: no previously-included files matching '~' found anywhere in distribution
warning: no previously-included files matching '.swp' found anywhere in distribution
warning: no previously-included files matching '.pyc' found anywhere in distribution
warning: no previously-included files matching '.pyo' found anywhere in distribution
warning: no previously-included files matching '.bak' found anywhere in distribution
File "/home/juaguila/.conda/envs/HOME/lib/python2.7/contextlib.py", line 35, in exit
self.gen.throw(type, value, traceback)
File "/home/juaguila/.conda/envs/HOME/lib/python2.7/site-packages/setuptools/sandbox.py", line 195, in setup_context
yield
File "/home/juaguila/.conda/envs/HOME/lib/python2.7/contextlib.py", line 35, in exit
self.gen.throw(type, value, traceback)
File "/home/juaguila/.conda/envs/HOME/lib/python2.7/site-packages/setuptools/sandbox.py", line 166, in save_modules
saved_exc.resume()
File "/home/juaguila/.conda/envs/HOME/lib/python2.7/site-packages/setuptools/sandbox.py", line 141, in resume
six.reraise(type, exc, self._tb)
File "/home/juaguila/.conda/envs/HOME/lib/python2.7/site-packages/setuptools/sandbox.py", line 154, in save_modules
yield saved
File "/home/juaguila/.conda/envs/HOME/lib/python2.7/site-packages/setuptools/sandbox.py", line 195, in setup_context
yield
File "/home/juaguila/.conda/envs/HOME/lib/python2.7/site-packages/setuptools/sandbox.py", line 250, in run_setup
_execfile(setup_script, ns)
File "/home/juaguila/.conda/envs/HOME/lib/python2.7/site-packages/setuptools/sandbox.py", line 45, in _execfile
exec(code, globals, locals)
File "/tmp/easy_install-0bJyLW/scikit-learn-0.16.1/setup.py", line 173, in
File "/tmp/easy_install-0bJyLW/scikit-learn-0.16.1/setup.py", line 165, in setup_package
ImportError: No module named numpy.distutils.core
You mentioned to have installed R but it doesn't seem to be anything related to R, since it mentions numpy, which is a python thing. Could you please tell what to install in R besides base R?