How to use "get_organelle_from_assembly.py" to complete the chloroplast?

[curtainDian]

Hi, Mr Kinggerm. I tried assembling the chloroplast by adjusting the parameters(-w, -max-reads, -reduce-reads-for-coverage and so on ) of get_organelle_from_reads.py many times but it turned out to be incomplete results. So I tried using the get_organelle_from_assembly.py and processes are as follows. Could you please offer some suggestions? Thanks a lot !



get_org.log.txt
get_org.log.txt
get_org.log.txt