Re-pin learntools related packages. (#1448)

These were unpinned during the base image migration but caused
learntools to fail.

http://b/365782129

Author: djherbis

Dockerfile.tmpl

@@ -21,10 +21,11 @@ ENV PATH="~/.local/bin:${PATH}"
 # b/183041606#comment5: the Kaggle data proxy doesn't support these APIs. If the library is missing, it falls back to using a regular BigQuery query to fetch data.
 RUN uv pip uninstall --system google-cloud-bigquery-storage
 
-# NOTE(herbison): uv fails to install this for some reason
-RUN pip install git+https://github.com/Kaggle/learntools
+# uv cannot install this in requirements.txt without --no-build-isolation
+# to avoid affecting the larger build, we'll post-install it.
+RUN uv pip install --no-build-isolation --system "git+https://github.com/Kaggle/learntools"
 
-# We install an incompatible pair of libs (shapely<, libpysal==4.9.2) so we can't put this one in the requirements.txt
+# b/328788268 We install an incompatible pair of libs (shapely<2, libpysal==4.9.2) so we can't put this one in the requirements.txt
 RUN uv pip install --system  "libpysal==4.9.2"
 
 # Adding non-package dependencies:

kaggle_requirements.txt

@@ -1,4 +1,5 @@
-altair>=5.4.0
+# Please keep this in alphabetical order
+Altair>=5.4.0
 Babel
 Boruta
 Cartopy
@@ -10,7 +11,8 @@ Pympler
 Rtree
 shapely<2
 SimpleITK
-TPOT
+# b/302136621: Fix eli5 import for learntools, newer version require scikit-learn > 1.3
+TPOT==0.12.1
 Theano
 Wand
 annoy
@@ -80,6 +82,8 @@ mamba
 mlcrate
 mne
 mpld3
+# b/274619697: learntools requires a specific nbconvert right now
+nbconvert==6.4.5
 nbdev
 nilearn
 olefile
@@ -115,13 +119,19 @@ qtconsole
 ray
 rgf-python
 s3fs
-scikit-learn-intelex
+ # b/302136621: Fix eli5 import for learntools
+scikit-learn==1.2.2
+# Scikit-learn accelerated library for x86
+scikit-learn-intelex>=2023.0.1
 scikit-multilearn
 scikit-optimize
 scikit-plot
 scikit-surprise
+# Also pinning seaborn for learntools
+seaborn==0.12.2
 git+https://github.com/facebookresearch/segment-anything.git
-shap
+# b/329869023 shap 0.45.0 breaks learntools
+shap==0.44.1
 squarify
 tensorflow-cloud
 tensorflow-io
@@ -134,6 +144,7 @@ tsfresh
 vtk
 wandb
 wavio
+# b/350573866: xgboost v2.1.0 breaks learntools
 xgboost==2.0.3
 xvfbwrapper
 ydata-profiling