Add xrefs and some missing example headers

Author: kshyatt

stdlib/LinearAlgebra/src/bunchkaufman.jl

@@ -120,7 +120,7 @@ end
 
 Compute the Bunch-Kaufman [^Bunch1977] factorization of a symmetric or
 Hermitian matrix `A` as `P'*U*D*U'*P` or `P'*L*D*L'*P`, depending on
-which triangle is stored in `A`, and return a `BunchKaufman` object.
+which triangle is stored in `A`, and return a [`BunchKaufman`](@ref) object.
 Note that if `A` is complex symmetric then `U'` and `L'` denote
 the unconjugated transposes, i.e. `transpose(U)` and `transpose(L)`.
 

stdlib/LinearAlgebra/src/cholesky.jl

@@ -302,8 +302,8 @@ end
     cholesky(A, Val(false); check = true) -> Cholesky
 
 Compute the Cholesky factorization of a dense symmetric positive definite matrix `A`
-and return a `Cholesky` factorization. The matrix `A` can either be a [`Symmetric`](@ref) or [`Hermitian`](@ref)
-`StridedMatrix` or a *perfectly* symmetric or Hermitian `StridedMatrix`.
+and return a [`Cholesky`](@ref) factorization. The matrix `A` can either be a [`Symmetric`](@ref) or [`Hermitian`](@ref)
+[`StridedMatrix`](@ref) or a *perfectly* symmetric or Hermitian `StridedMatrix`.
 The triangular Cholesky factor can be obtained from the factorization `F` with: `F.L` and `F.U`.
 The following functions are available for `Cholesky` objects: [`size`](@ref), [`\\`](@ref),
 [`inv`](@ref), [`det`](@ref), [`logdet`](@ref) and [`isposdef`](@ref).
@@ -353,8 +353,8 @@ cholesky(A::Union{StridedMatrix,RealHermSymComplexHerm{<:Real,<:StridedMatrix}},
     cholesky(A, Val(true); tol = 0.0, check = true) -> CholeskyPivoted
 
 Compute the pivoted Cholesky factorization of a dense symmetric positive semi-definite matrix `A`
-and return a `CholeskyPivoted` factorization. The matrix `A` can either be a [`Symmetric`](@ref)
-or [`Hermitian`](@ref) `StridedMatrix` or a *perfectly* symmetric or Hermitian `StridedMatrix`.
+and return a [`CholeskyPivoted`](@ref) factorization. The matrix `A` can either be a [`Symmetric`](@ref)
+or [`Hermitian`](@ref) [`StridedMatrix`](@ref) or a *perfectly* symmetric or Hermitian `StridedMatrix`.
 The triangular Cholesky factor can be obtained from the factorization `F` with: `F.L` and `F.U`.
 The following functions are available for `CholeskyPivoted` objects:
 [`size`](@ref), [`\\`](@ref), [`inv`](@ref), [`det`](@ref), and [`rank`](@ref).

stdlib/LinearAlgebra/src/eigen.jl

@@ -179,7 +179,7 @@ end
 """
     eigen(A; permute::Bool=true, scale::Bool=true, sortby) -> Eigen
 
-Computes the eigenvalue decomposition of `A`, returning an `Eigen` factorization object `F`
+Computes the eigenvalue decomposition of `A`, returning an [`Eigen`](@ref) factorization object `F`
 which contains the eigenvalues in `F.values` and the eigenvectors in the columns of the
 matrix `F.vectors`. (The `k`th eigenvector can be obtained from the slice `F.vectors[:, k]`.)
 
@@ -195,7 +195,7 @@ make rows and columns more equal in norm. The default is `true` for both options
 By default, the eigenvalues and vectors are sorted lexicographically by `(real(λ),imag(λ))`.
 A different comparison function `by(λ)` can be passed to `sortby`, or you can pass
 `sortby=nothing` to leave the eigenvalues in an arbitrary order.   Some special matrix types
-(e.g. `Diagonal` or `SymTridiagonal`) may implement their own sorting convention and not
+(e.g. [`Diagonal`](@ref) or [`SymTridiagonal`](@ref)) may implement their own sorting convention and not
 accept a `sortby` keyword.
 
 # Examples
@@ -457,7 +457,7 @@ end
     eigen(A, B) -> GeneralizedEigen
 
 Computes the generalized eigenvalue decomposition of `A` and `B`, returning a
-`GeneralizedEigen` factorization object `F` which contains the generalized eigenvalues in
+[`GeneralizedEigen`](@ref) factorization object `F` which contains the generalized eigenvalues in
 `F.values` and the generalized eigenvectors in the columns of the matrix `F.vectors`.
 (The `k`th generalized eigenvector can be obtained from the slice `F.vectors[:, k]`.)
 

stdlib/LinearAlgebra/src/lq.jl

@@ -5,7 +5,7 @@
     LQ <: Factorization
 
 Matrix factorization type of the `LQ` factorization of a matrix `A`. The `LQ`
-decomposition is the `QR` decomposition of `transpose(A)`. This is the return
+decomposition is the [`QR`](@ref) decomposition of `transpose(A)`. This is the return
 type of [`lq`](@ref), the corresponding matrix factorization function.
 
 If `S::LQ` is the factorization object, the lower triangular component can be
@@ -67,15 +67,15 @@ LQPackedQ(factors::AbstractMatrix{T}, τ::Vector{T}) where {T} = LQPackedQ{T,typ
 """
     lq!(A) -> LQ
 
-Compute the LQ factorization of `A`, using the input
+Compute the [`LQ`](@ref) factorization of `A`, using the input
 matrix as a workspace. See also [`lq`](@ref).
 """
 lq!(A::StridedMatrix{<:BlasFloat}) = LQ(LAPACK.gelqf!(A)...)
 """
     lq(A) -> S::LQ
 
 Compute the LQ decomposition of `A`. The decomposition's lower triangular
-component can be obtained from the `LQ` object `S` via `S.L`, and the
+component can be obtained from the [`LQ`](@ref) object `S` via `S.L`, and the
 orthogonal/unitary component via `S.Q`, such that `A ≈ S.L*S.Q`.
 
 Iterating the decomposition produces the components `S.L` and `S.Q`.

stdlib/LinearAlgebra/src/lu.jl

@@ -9,7 +9,7 @@
 Matrix factorization type of the `LU` factorization of a square matrix `A`. This
 is the return type of [`lu`](@ref), the corresponding matrix factorization function.
 
-The individual components of the factorization `F::LU` can be accessed via `getproperty`:
+The individual components of the factorization `F::LU` can be accessed via [`getproperty`](@ref):
 
 | Component | Description                              |
 |:----------|:-----------------------------------------|
@@ -210,10 +210,10 @@ validity (via [`issuccess`](@ref)) lies with the user.
 
 In most cases, if `A` is a subtype `S` of `AbstractMatrix{T}` with an element
 type `T` supporting `+`, `-`, `*` and `/`, the return type is `LU{T,S{T}}`. If
-pivoting is chosen (default) the element type should also support `abs` and
-`<`.
+pivoting is chosen (default) the element type should also support [`abs`](@ref) and
+[`<`](@ref).
 
-The individual components of the factorization `F` can be accessed via `getproperty`:
+The individual components of the factorization `F` can be accessed via [`getproperty`](@ref):
 
 | Component | Description                         |
 |:----------|:------------------------------------|

stdlib/LinearAlgebra/src/qr.jl

@@ -256,7 +256,7 @@ qr!(A::StridedMatrix{<:BlasFloat}, ::Val{true}) = QRPivoted(LAPACK.geqp3!(A)...)
     qr!(A, pivot=Val(false); blocksize)
 
 `qr!` is the same as [`qr`](@ref) when `A` is a subtype of
-`StridedMatrix`, but saves space by overwriting the input `A`, instead of creating a copy.
+[`StridedMatrix`](@ref), but saves space by overwriting the input `A`, instead of creating a copy.
 An [`InexactError`](@ref) exception is thrown if the factorization produces a number not
 representable by the element type of `A`, e.g. for integer types.
 

stdlib/LinearAlgebra/src/symmetric.jl

@@ -668,15 +668,15 @@ eigen!(A::RealHermSymComplexHerm{<:BlasReal,<:StridedMatrix}, irange::UnitRange)
 """
     eigen(A::Union{SymTridiagonal, Hermitian, Symmetric}, irange::UnitRange) -> Eigen
 
-Computes the eigenvalue decomposition of `A`, returning an `Eigen` factorization object `F`
+Computes the eigenvalue decomposition of `A`, returning an [`Eigen`](@ref) factorization object `F`
 which contains the eigenvalues in `F.values` and the eigenvectors in the columns of the
 matrix `F.vectors`. (The `k`th eigenvector can be obtained from the slice `F.vectors[:, k]`.)
 
 Iterating the decomposition produces the components `F.values` and `F.vectors`.
 
 The following functions are available for `Eigen` objects: [`inv`](@ref), [`det`](@ref), and [`isposdef`](@ref).
 
-The `UnitRange` `irange` specifies indices of the sorted eigenvalues to search for.
+The [`UnitRange`](@ref) `irange` specifies indices of the sorted eigenvalues to search for.
 
 !!! note
     If `irange` is not `1:n`, where `n` is the dimension of `A`, then the returned factorization
@@ -694,7 +694,7 @@ eigen!(A::RealHermSymComplexHerm{T,<:StridedMatrix}, vl::Real, vh::Real) where {
 """
     eigen(A::Union{SymTridiagonal, Hermitian, Symmetric}, vl::Real, vu::Real) -> Eigen
 
-Computes the eigenvalue decomposition of `A`, returning an `Eigen` factorization object `F`
+Computes the eigenvalue decomposition of `A`, returning an [`Eigen`](@ref) factorization object `F`
 which contains the eigenvalues in `F.values` and the eigenvectors in the columns of the
 matrix `F.vectors`. (The `k`th eigenvector can be obtained from the slice `F.vectors[:, k]`.)
 
@@ -736,9 +736,10 @@ eigvals!(A::RealHermSymComplexHerm{<:BlasReal,<:StridedMatrix}, irange::UnitRang
     eigvals(A::Union{SymTridiagonal, Hermitian, Symmetric}, irange::UnitRange) -> values
 
 Returns the eigenvalues of `A`. It is possible to calculate only a subset of the
-eigenvalues by specifying a `UnitRange` `irange` covering indices of the sorted eigenvalues,
+eigenvalues by specifying a [`UnitRange`](@ref) `irange` covering indices of the sorted eigenvalues,
 e.g. the 2nd to 8th eigenvalues.
 
+# Examples
 ```jldoctest
 julia> A = SymTridiagonal([1.; 2.; 1.], [2.; 3.])
 3×3 SymTridiagonal{Float64,Array{Float64,1}}:
@@ -778,6 +779,7 @@ eigvals!(A::RealHermSymComplexHerm{T,<:StridedMatrix}, vl::Real, vh::Real) where
 Returns the eigenvalues of `A`. It is possible to calculate only a subset of the eigenvalues
 by specifying a pair `vl` and `vu` for the lower and upper boundaries of the eigenvalues.
 
+# Examples
 ```jldoctest
 julia> A = SymTridiagonal([1.; 2.; 1.], [2.; 3.])
 3×3 SymTridiagonal{Float64,Array{Float64,1}}: