merge

Author: Siedlerchr

.github/PULL_REQUEST_TEMPLATE.md

@@ -19,7 +19,7 @@ Go through the checklist below. It is mandatory, even for a draft pull request.
 
 Keep ALL the items. Replace the dots inside [.] and mark them as follows: 
 [x] done 
-[ ] not done 
+[ ] TODO (yet to be done)
 [/] not applicable
 -->
 

.github/workflows/automerge.yml

@@ -11,14 +11,19 @@ jobs:
     # Run only if PR is inside JabRef's main repository and created by dependabot or by an update workflow
     if: >
       (github.repository == 'JabRef/jabref') &&
-      (github.event.pull_request.head.repo.full_name == 'JabRef/jabref') &&
       (
-        (github.actor == 'dependabot[bot]') ||
+        (github.actor == 'renovate-bot' && startsWith(github.event.pull_request.title, 'chore(deps):')) ||
         (
-          startsWith(github.event.pull_request.title, '[Bot] ') ||
-          startsWith(github.event.pull_request.title, 'Bump ') ||
-          startsWith(github.event.pull_request.title, 'New Crowdin updates') ||
-          startsWith(github.event.pull_request.title, 'Update Gradle Wrapper from')
+          (github.event.pull_request.head.repo.full_name == 'JabRef/jabref') &&
+          (
+            (github.actor == 'dependabot[bot]') ||
+            (
+              startsWith(github.event.pull_request.title, '[Bot] ') ||
+              startsWith(github.event.pull_request.title, 'Bump ') ||
+              startsWith(github.event.pull_request.title, 'New Crowdin updates') ||
+              startsWith(github.event.pull_request.title, 'Update Gradle Wrapper from')
+            )
+          )
         )
       )
     steps:

.github/workflows/pr-comment.yml

@@ -79,7 +79,7 @@ jobs:
       # This step runs in both cases using the proper variables.
       - name: ghprcomment@main
         if: ${{ github.event_name == 'workflow_dispatch' || (steps.read-pr_number.outputs.pr_number != '' && steps.isCrossRepository.outputs.isCrossRepository == 'true') }}
-        uses: jbangdev/jbang-action@v0.126.1
+        uses: jbangdev/jbang-action@v0.126.2
         with:
           script: https://github.com/koppor/ghprcomment/blob/main/ghprcomment.java
           scriptargs: "-r JabRef/jabref -p ${{ steps.set-vars.outputs.pr_number }} -w ${{ steps.set-vars.outputs.workflow_run_id }}"

.github/workflows/update-gradle-wrapper.yml

@@ -3,6 +3,9 @@ name: Update Gradle Wrapper
 on:
   schedule:
     - cron: "0 5 * * 1"
+  pull_request:
+    paths:
+      - .github/workflows/update-gradle-wrapper.yml
   workflow_dispatch:
 
 jobs:

.jbang/CheckoutPR.java

@@ -21,7 +21,7 @@
 //RUNTIME_OPTIONS --enable-native-access=ALL-UNNAMED
 
 //DEPS org.kohsuke:github-api:2.0-rc.3
-//DEPS org.eclipse.jgit:org.eclipse.jgit.pgm:7.2.1.202505142326-r
+//DEPS org.eclipse.jgit:org.eclipse.jgit.pgm:7.3.0.202506031305-r
 
 public class CheckoutPR {
     public static void main(String[] args) throws Exception {

.jbang/CloneJabRef.java

@@ -6,7 +6,7 @@
 //JAVA 21+
 //RUNTIME_OPTIONS --enable-native-access=ALL-UNNAMED
 
-//DEPS org.eclipse.jgit:org.eclipse.jgit.pgm:7.2.1.202505142326-r
+//DEPS org.eclipse.jgit:org.eclipse.jgit.pgm:7.3.0.202506031305-r
 
 public class CloneJabRef {
     public static void main(String[] args) throws Exception {

CHANGELOG.md

@@ -11,6 +11,11 @@ Note that this project **does not** adhere to [Semantic Versioning](https://semv
 
 ### Added
 
+- We introduced a settings parameters to manage citations' relations local storage time-to-live with a default value set to 30 days. [#11189](https://github.com/JabRef/jabref/issues/11189)
+
+### Changed
+
+- We improved the citations relations caching by implementing an offline storage. [#11189](https://github.com/JabRef/jabref/issues/11189)
 - We added a tooltip to keywords that resemble Math Subject Classification (MSC) codes. [#12944](https://github.com/JabRef/jabref/issues/12944)
 - We added a feature to convert keywords that resemble MSC codes to their descriptions. [#12944](https://github.com/JabRef/jabref/issues/12944)
 - We introduced a new command line application called `jabkit`. [#13012](https://github.com/JabRef/jabref/pull/13012) [#110](https://github.com/JabRef/jabref/issues/110)
@@ -23,6 +28,7 @@ Note that this project **does not** adhere to [Semantic Versioning](https://semv
 - We added a new button to toggle the file path between an absolute and relative formats in context of library properties. [#13031](https://github.com/JabRef/jabref/issues/13031)
 - We introduced user-configurable group 'Imported entries' for automatic import of entries from web search, PDF import and web fetchers. [#12548](https://github.com/JabRef/jabref/issues/12548)
 - We added automatic selection of the “Enter Identifier” tab with pre-filled clipboard content if the clipboard contains a valid identifier when opening the “Create New Entry” dialog. [#13087](https://github.com/JabRef/jabref/issues/13087)
+- We added batch fetching of bibliographic data for multiple entries in the "Lookup" menu. [#12275](https://github.com/JabRef/jabref/issues/12275)
 - We added an "Open example library" button to Welcome Tab. [#13014](https://github.com/JabRef/jabref/issues/13014)
 - We added automatic detection and selection of the identifier type (e.g., DOI, ISBN, arXiv) based on clipboard content when opening the "New Entry" dialog [#13111](https://github.com/JabRef/jabref/pull/13111)
 - We added support for import of a Refer/BibIX file format. [#13069](https://github.com/JabRef/jabref/issues/13069)
@@ -44,13 +50,15 @@ Note that this project **does not** adhere to [Semantic Versioning](https://semv
 
 - We added a fallback for the "Convert to biblatex" cleanup when it failed to populate the `date` field if `year` contained a full date in ISO format (e.g., `2011-11-11`). [#11868](https://github.com/JabRef/jabref/issues/11868)
 - We fixed an issue where directory check for relative path was not handled properly under library properties. [#13017](https://github.com/JabRef/jabref/issues/13017)
+- We fixed an exception on tab dragging. [#12921](https://github.com/JabRef/jabref/issues/12921)
 - We fixed an issue where the option for which method to use when parsing plaintext citations was unavailable in the 'Create New Entry' tool. [#8808](https://github.com/JabRef/jabref/issues/8808)
 - We fixed an issue where the "Make/Sync bibliography" button in the OpenOffice/LibreOffice sidebar was not enabled when a jstyle was selected. [#13055](https://github.com/JabRef/jabref/pull/13055)
 - We fixed an issue where CSL bibliography title properties would be saved even if the "Modify bibliography title" dialog was closed without pressing the "OK" button. [#13074](https://github.com/JabRef/jabref/pull/13074)
 - We added "Hanging Indent" as the default selected bibliography body format for CSL styles that specify it (e.g. APA). [#13074](https://github.com/JabRef/jabref/pull/13074)
 - We fixed an issue where bibliography entries generated from CSL styles had leading spaces. [#13074](https://github.com/JabRef/jabref/pull/13074)
 - We fixed an issue where the preview area in the "Select Style" dialog of the LibreOffice integration was too small to display full content. [#13051](https://github.com/JabRef/jabref/issues/13051)
 - We fixed an issue where the tab showing the fulltext search results was not displayed. [#12865](https://github.com/JabRef/jabref/issues/12865)
+- We fixed an issue showing an empty tooltip in maintable. [#11681](https://github.com/JabRef/jabref/issues/11681)
 
 ### Removed
 

build-logic/build.gradle.kts

@@ -12,7 +12,7 @@ dependencies {
     implementation("org.gradlex:extra-java-module-info:1.12")
     implementation("org.gradlex:java-module-packaging:1.0.1") // required for platform-specific packaging of JavaFX dependencies
     implementation("org.gradlex:java-module-testing:1.7")
-    implementation("org.gradlex.jvm-dependency-conflict-resolution:org.gradlex.jvm-dependency-conflict-resolution.gradle.plugin:2.3")
+    implementation("org.gradlex.jvm-dependency-conflict-resolution:org.gradlex.jvm-dependency-conflict-resolution.gradle.plugin:2.4")
 
     configurations
         .matching { it.name.contains("downloadSources") }

build-logic/src/main/kotlin/buildlogic.java-common-conventions.gradle.kts

@@ -158,6 +158,43 @@ extraJavaModuleInfo {
         // PATCH REASON:
         exports("com.sun.javafx.scene.control")
     }
+
+    // Workaround for https://github.com/wiremock/wiremock/issues/2149
+    module("org.wiremock:wiremock", "wiremock") {
+        overrideModuleName()
+        patchRealModule()
+        exportAllPackages()
+
+        requires("wiremock.slf4j.spi.shim")
+        requires("com.fasterxml.jackson.core")
+        requires("com.fasterxml.jackson.databind")
+        requires("com.fasterxml.jackson.datatype.jsr310")
+        requires("com.google.common")
+        requires("commons.fileupload")
+        requires("org.eclipse.jetty.server")
+        requires("org.eclipse.jetty.servlet")
+        requires("org.eclipse.jetty.servlets")
+        requires("org.eclipse.jetty.webapp")
+        requires("org.eclipse.jetty.proxy")
+        requires("org.eclipse.jetty.http2.server")
+        requires("org.eclipse.jetty.alpn.server")
+        requires("org.eclipse.jetty.alpn.java.server")
+        requires("org.eclipse.jetty.alpn.java.client")
+        requires("org.eclipse.jetty.alpn.client")
+        requires("java.xml")
+        requires("org.custommonkey.xmlunit")
+        requires("org.slf4j")
+        requires("org.xmlunit")
+
+        uses("com.github.tomakehurst.wiremock.extension.Extension")
+
+        // workaround for https://github.com/wiremock/wiremock/issues/2874
+        mergeJar("com.github.jknack:handlebars")
+        mergeJar("com.github.jknack:handlebars-helpers")
+
+        // Required to provide package "wiremock.org.slf4j.helpers"
+        mergeJar("com.github.koppor:wiremock-slf4j-shim")
+    }
 }
 
 testing {

gradle.properties

@@ -2,7 +2,7 @@ org.gradle.vfs.watch=true
 
 # Hint by https://docs.gradle.org/current/userguide/performance.html#increase_the_heap_size
 # Otherwise, one gets "Java heap space" errors.
-org.gradle.jvmargs=-Xmx6096M
+org.gradle.jvmargs=-Xmx6g
 
 # hint by https://docs.gradle.org/current/userguide/performance.html#enable_configuration_cache
 # Blocked by https://github.com/beryx/badass-jlink-plugin/issues/304