@@ -7,20 +7,20 @@ process {
77 withLabel:process_low {
88 cpus = { check_max( 2 * task.attempt, 'cpus' ) }
99 memory = { check_max( 12.GB * task.attempt, 'memory' ) }
10- time = { check_max( 4 .h * task.attempt, 'time' ) }
10+ time = { check_max( 8 .h * task.attempt, 'time' ) }
1111 }
1212 withLabel:process_medium {
1313 cpus = { check_max( 4 * task.attempt, 'cpus' ) }
1414 memory = { check_max( 32.GB * task.attempt, 'memory' ) }
15- time = { check_max( 8 .h * task.attempt, 'time' ) }
15+ time = { check_max( 16 .h * task.attempt, 'time' ) }
1616 }
1717 withLabel:process_high {
1818 cpus = { check_max( 12 * task.attempt, 'cpus' ) }
1919 memory = { check_max( 72.GB * task.attempt, 'memory' ) }
20- time = { check_max( 16 .h * task.attempt, 'time' ) }
20+ time = { check_max( 24 .h * task.attempt, 'time' ) }
2121 }
2222 withLabel:process_long {
23- time = { check_max( 20 .h * task.attempt, 'time' ) }
23+ time = { check_max( 48 .h * task.attempt, 'time' ) }
2424 }
2525 withLabel:process_high_memory {
2626 memory = { check_max( 200.GB * task.attempt, 'memory' ) }
@@ -35,17 +35,16 @@ process {
3535 withLabel: 'process_bismark_align' {
3636 cpus = 8
3737 memory = 32.GB
38- time = '24h '
38+ time = '72h '
3939 maxForks = 8 // Allow up to 8 concurrent BISMARK_ALIGN processes
4040 }
4141}
4242
4343
44-
4544executor {
4645 name = 'local'
47- cpus = 96 // Assuming your server has 96 cores as mentioned earlier
48- memory = '512 GB' // Assuming your server has 512 GB RAM as mentioned earlier
46+ cpus = 84
47+ memory = '400 GB'
4948 queueSize = 8 // Allow queuing of up to 8 processes
5049}
5150
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