Merge pull request #7 from JD2112/devel

Sample_sheet updated

Author: JD2112

artworks/Figure 1.png

@@ -1,9 +1,9 @@
 sample_id,group,read1,read2
-PN0420_0009,Healthy,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0009/KN1_S9_R1_001.fastq.gz,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0009/KN1_S9_R2_001.fastq.gz
-PN0420_0010,Diabetic,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0010/KN2_S10_R1_001.fastq.gz,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0010/KN2_S10_R2_001.fastq.gz
-PN0420_0011,Healthy,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0011/KN3_S11_R1_001.fastq.gz,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0011/KN3_S11_R2_001.fastq.gz
-PN0420_0012,Diabetic,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0012/KN4_S12_R1_001.fastq.gz,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0012/KN4_S12_R2_001.fastq.gz
-PN0420_0013,Healthy,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0013/KN5_S13_R1_001.fastq.gz,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0013/KN5_S13_R2_001.fastq.gz
-PN0420_0014,Diabetic,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0014/KN6_S14_R1_001.fastq.gz,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0014/KN6_S14_R2_001.fastq.gz
-PN0420_0015,Healthy,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0015/KN7_S15_R1_001.fastq.gz,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0015/KN7_S15_R2_001.fastq.gz
-PN0420_0016,Diabetic,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0016/KN8_S16_R1_001.fastq.gz,/mnt/SD3/CFFMHS-KW-3564/FASTQ/PN0420_0016/KN8_S16_R2_001.fastq.gz
+SN_1,Healthy,/data/SN1_S9_R1_001.fastq.gz,/data//SN1_S9_R2_001.fastq.gz
+SN_2,Disease,/data/SN2_S10_R1_001.fastq.gz,/data/SN2_S10_R2_001.fastq.gz
+SN_3,Healthy,/data/SN3_S11_R1_001.fastq.gz,/data/SN3_S11_R2_001.fastq.gz
+SN_0012,Disease,/data/SN4_S12_R1_001.fastq.gz,/data/SN4_S12_R2_001.fastq.gz
+SN_0013,Healthy,/data/SN5_S13_R1_001.fastq.gz,/data/SN5_S13_R2_001.fastq.gz
+SN_0014,Disease,/data/SN6_S14_R1_001.fastq.gz,/data/SN6_S14_R2_001.fastq.gz
+SN_0015,Healthy,/data/SN7_S15_R1_001.fastq.gz,/data/SN7_S15_R2_001.fastq.gz
+SN_0016,Disease,/data/SN8_S16_R1_001.fastq.gz,/data/SN8_S16_R2_001.fastq.gz

data/Sample_sheet_twist.csv

@@ -1,6 +1,6 @@
 FROM continuumio/miniconda3:4.10.3
 LABEL authors="Jyotirmoy Das" \
-      description="Docker image containing all requirements for TwistNext pipeline"
+      description="Docker image containing all requirements for TwistMethNext pipeline"
 # Set working directory
 WORKDIR /app
 

docs/images/Figure 1.png

@@ -10,7 +10,7 @@ From: continuumio/miniconda3:4.10.3
 
 %labels
     authors="Jyotirmoy Das" 
-    description="Singularity image containing all requirements for TwistNext pipeline"
+    description="Singularity image containing all requirements for TwistMethNext pipeline"
 
 %post
     apt-get update && apt-get install -y procps

docs/images/TN.png

@@ -1,4 +1,4 @@
-name: twistnext
+name: twistmethnext
 channels:
   - conda-forge
   - bioconda